Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_P20
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0596 - 26497863-26497913,26498010-26498081,26499015-264990... 29 3.2
04_04_0201 - 23555336-23556008,23556097-23556258,23556353-235572... 29 3.2
03_06_0553 - 34682581-34683183,34683687-34683842,34684154-346842... 29 3.2
03_03_0216 + 15495395-15495566,15495648-15495733,15495824-154958... 29 4.2
06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804 29 5.5
03_05_0136 + 21158917-21159939,21160183-21160241,21160259-211602... 29 5.5
05_03_0501 + 14744913-14745107,14745545-14745571,14746002-147460... 28 9.7
01_03_0301 - 14785898-14786299,14786785-14787234 28 9.7
>04_04_0596 -
26497863-26497913,26498010-26498081,26499015-26499093,
26499440-26499553,26499822-26499871,26500353-26500398,
26501100-26501719
Length = 343
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +2
Query: 533 RDWRSVQEGRACRKDDSRNLGRFYDSGAEDIS-SSGSDCSTGTRGEERTDHALRTR*SDR 709
R R ++ R R+ SR+ S +E S SS SDCS G+ E ++ R R R
Sbjct: 79 RKRRRKEKERRHRRRRSRSASSGSSSESESESESSYSDCSAGSESETDSEEERRRRRRRR 138
Query: 710 KRQRDPTRKR 739
+R+ +R
Sbjct: 139 RRKEREEEER 148
>04_04_0201 -
23555336-23556008,23556097-23556258,23556353-23557206,
23557452-23557613,23558197-23558649,23559729-23559788,
23559983-23560058,23561546-23561593,23561948-23562022,
23562067-23562494
Length = 996
Score = 29.5 bits (63), Expect = 3.2
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = +3
Query: 396 TYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYKKDEPVEK 575
T S+ V+ AA + +G + VT+ +S+ VD+ V+P+ A + DE K
Sbjct: 659 TASMQVHEGAAAAQLGESPEG-VDVTSAVSDEVDRDDKATHVLPLAAAAADGESDELERK 717
Query: 576 ----TTVETLDVST 605
+ T+D+ST
Sbjct: 718 RRKLDSCATMDMST 731
>03_06_0553 -
34682581-34683183,34683687-34683842,34684154-34684272,
34684691-34684793,34685027-34685299,34685411-34685602,
34686691-34687029
Length = 594
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 3 LQHVSPXQMFSPRLFAVFIAFAGFTTVTALPARAKAVIAQP 125
L+H+ +S + F+ F+ F G+ L +A+A + QP
Sbjct: 141 LEHLKICMFYSKKTFSAFLQFGGYNQEDILIHKARARLMQP 181
>03_03_0216 +
15495395-15495566,15495648-15495733,15495824-15495874,
15496005-15496390,15496760-15496898,15497540-15497595,
15497712-15497782,15497876-15498081
Length = 388
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 539 WRSVQEGRACRKDDSRNLGRFYDSGAEDISSSGSDCSTG 655
WR + +A D LG+ Y +E++S+S SDC +G
Sbjct: 2 WRFLGASKALTSSDVWFLGKCYKLSSEELSNS-SDCESG 39
>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
Length = 1209
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Frame = -3
Query: 657 VPVLQSLPLELMSSAPES*K----RPRFLLSSFLQARPS-CTERQSR 532
V VLQS+P + SS+P S K P F+ SS ++R S C ++ R
Sbjct: 256 VVVLQSVPTQQQSSSPSSSKLRADAPEFIPSSIKKSRASRCKAKKKR 302
>03_05_0136 +
21158917-21159939,21160183-21160241,21160259-21160294,
21160345-21160387,21160582-21160698,21162090-21162179,
21162329-21162436,21162547-21162588
Length = 505
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +2
Query: 596 RFYDSGAEDISSSGSDCSTGTRG 664
R D+GA D++SSGS+CS +RG
Sbjct: 176 RRLDAGA-DVASSGSECSDASRG 197
>05_03_0501 +
14744913-14745107,14745545-14745571,14746002-14746097,
14746479-14746769
Length = 202
Score = 27.9 bits (59), Expect = 9.7
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +2
Query: 551 QEGRACRKDDSRNLGRFYDSGAED---ISSSGSDCSTGTRGEERTDHALRTR*SDRKRQ 718
++G K D R++G D GA +SSSG +TG G+ + + A +D++ Q
Sbjct: 57 EKGEKLTKKDIRSIGIGMDLGAASAVAVSSSGGRRATGEIGQRQVESAGELGLTDKQLQ 115
>01_03_0301 - 14785898-14786299,14786785-14787234
Length = 283
Score = 27.9 bits (59), Expect = 9.7
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -2
Query: 178 NGERF---SHGNVNWXSVMVTGCAITALARAGKAVTVVKPAKAMKTA 47
+GER S+G + TGCA TAL A AV V +P+ AM A
Sbjct: 187 DGERVVGVSNGVAMMQKITATGCAATALIAAFLAV-VEEPSDAMAAA 232
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,769,301
Number of Sequences: 37544
Number of extensions: 336703
Number of successful extensions: 1066
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -