Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_P16
(492 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 147 9e-37
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 147 9e-37
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 87 1e-18
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 87 1e-18
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 87 1e-18
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 57 2e-09
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 38 0.001
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 36 0.003
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 29 0.50
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 27 2.0
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 27 2.0
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 25 4.7
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 25 6.2
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 147 bits (356), Expect = 9e-37
Identities = 72/124 (58%), Positives = 85/124 (68%)
Frame = +1
Query: 10 HVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXXN 189
+VK+KIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 25 NVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKT 84
Query: 190 YSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKC 369
Y+TP LAVL++YKV+++G + RLRREC CGA FMA +DR YCG+C
Sbjct: 85 YTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMANHKDRLYCGRC 142
Query: 370 HSTM 381
H T+
Sbjct: 143 HLTL 146
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 147 bits (356), Expect = 9e-37
Identities = 72/124 (58%), Positives = 85/124 (68%)
Frame = +1
Query: 10 HVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXXN 189
+VK+KIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 25 NVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKT 84
Query: 190 YSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKC 369
Y+TP LAVL++YKV+++G + RLRREC CGA FMA +DR YCG+C
Sbjct: 85 YTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMANHKDRLYCGRC 142
Query: 370 HSTM 381
H T+
Sbjct: 143 HLTL 146
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 87.4 bits (207), Expect = 1e-18
Identities = 41/46 (89%), Positives = 44/46 (95%)
Frame = +1
Query: 10 HVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 147
+VK+KIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 25 NVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 87.4 bits (207), Expect = 1e-18
Identities = 41/46 (89%), Positives = 44/46 (95%)
Frame = +1
Query: 10 HVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 147
+VK+KIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 25 NVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 87.4 bits (207), Expect = 1e-18
Identities = 41/46 (89%), Positives = 44/46 (95%)
Frame = +1
Query: 10 HVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 147
+VK+KIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 25 NVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 87.4 bits (207), Expect = 1e-18
Identities = 41/46 (89%), Positives = 44/46 (95%)
Frame = +1
Query: 10 HVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 147
+VK+KIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 101 NVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 87.4 bits (207), Expect = 1e-18
Identities = 41/46 (89%), Positives = 44/46 (95%)
Frame = +1
Query: 10 HVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 147
+VK+KIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 177 NVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 87.4 bits (207), Expect = 1e-18
Identities = 41/46 (89%), Positives = 44/46 (95%)
Frame = +1
Query: 10 HVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 147
+VK+KIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 253 NVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 87.4 bits (207), Expect = 1e-18
Identities = 41/46 (89%), Positives = 44/46 (95%)
Frame = +1
Query: 10 HVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 147
+VK+KIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 329 NVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 56.8 bits (131), Expect = 2e-09
Identities = 23/47 (48%), Positives = 34/47 (72%)
Frame = +1
Query: 7 SHVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 147
S +K +++ K GIPP+QQRLI+AGKQ+ D + Y+++ S LHLV
Sbjct: 24 SRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLV 70
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 37.5 bits (83), Expect = 0.001
Identities = 15/41 (36%), Positives = 28/41 (68%)
Frame = +1
Query: 7 SHVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKE 129
S +K KIQ + +Q+LI++G+ L D +T+ +YNI+++
Sbjct: 25 SELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 36.3 bits (80), Expect = 0.003
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +1
Query: 13 VKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 147
+K I I +QRLI+AG+ L+D +L Y IQ ++HLV
Sbjct: 29 LKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLV 73
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 28.7 bits (61), Expect = 0.50
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 459 NPSYTAVASVPYRLEGTYLFVVVFEDHRAVTLPAV 355
NP+YT Y L TYL F++HR + AV
Sbjct: 144 NPAYTNSHQNSYSLNETYLSYDFFDNHRGASSSAV 178
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 26.6 bits (56), Expect = 2.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 127 PSGYCSPRGYVHLPAAFQQRSTSVDWEGF 41
PS + PRG V+ P+ ++R + + GF
Sbjct: 17 PSSFLKPRGLVYRPSQIRRRVSLLSLSGF 45
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 26.6 bits (56), Expect = 2.0
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 241 VLRFY-KVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFKDDD 399
V+R Y ++ +N + R C E F V++D H KC + ++ D
Sbjct: 224 VIRCYLRLSDNPRAREALRHCLPEPLRDATFAQVLKDDHNTKKCLAQLLINLSD 277
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 25.4 bits (53), Expect = 4.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 372 VTLPAVVTVLHHRHEHSGAALLAC 301
VTL A+ T+L + H H L+AC
Sbjct: 402 VTLKAIETLLENTHSHVLPILVAC 425
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.0 bits (52), Expect = 6.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 49 PNQQRLIFAGKQLEDGRTLSDYNI 120
PNQ AGK+L+ R L DY+I
Sbjct: 476 PNQGDTRKAGKRLKYSRNLDDYHI 499
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,804,231
Number of Sequences: 5004
Number of extensions: 30768
Number of successful extensions: 79
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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