Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_P16
(492 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.) 169 1e-42
SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.) 89 2e-18
SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0) 89 2e-18
SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0) 89 2e-18
SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29) 75 3e-14
SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037) 74 6e-14
SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10) 42 3e-04
SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11) 36 0.018
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) 33 0.13
SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05) 33 0.17
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 32 0.22
SB_59803| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5) 28 3.6
SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_15135| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39) 28 4.8
SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39) 28 4.8
SB_50156| Best HMM Match : RVT_1 (HMM E-Value=7.2e-37) 27 6.4
SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39) 27 6.4
SB_39101| Best HMM Match : RVT_1 (HMM E-Value=2.4e-38) 27 6.4
SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38) 27 6.4
SB_46071| Best HMM Match : RVP (HMM E-Value=3e-05) 27 6.4
SB_45108| Best HMM Match : RVT_1 (HMM E-Value=4.9e-37) 27 6.4
SB_23675| Best HMM Match : zf-CCHC (HMM E-Value=0.00067) 27 6.4
SB_19158| Best HMM Match : zf-CCHC (HMM E-Value=0.00067) 27 6.4
SB_15324| Best HMM Match : RVP (HMM E-Value=8.1e-05) 27 6.4
SB_10983| Best HMM Match : RVP (HMM E-Value=3.8e-05) 27 6.4
SB_2074| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_16229| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_53217| Best HMM Match : RVT_1 (HMM E-Value=3.1e-13) 27 8.4
>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 169 bits (410), Expect = 1e-42
Identities = 84/126 (66%), Positives = 89/126 (70%)
Frame = +1
Query: 10 HVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXXN 189
+VKAKIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV N
Sbjct: 25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKN 84
Query: 190 YSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKC 369
Y+TP LAVL++YKVDENGKI RLRREC E CGAGVFMA DR YCGKC
Sbjct: 85 YTTPKKIKHKKKKVKLAVLKYYKVDENGKITRLRRECPSESCGAGVFMASHFDRQYCGKC 144
Query: 370 HSTMVF 387
T VF
Sbjct: 145 CLTYVF 150
>SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 88.6 bits (210), Expect = 2e-18
Identities = 42/46 (91%), Positives = 44/46 (95%)
Frame = +1
Query: 10 HVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 147
+VKAKIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 88.6 bits (210), Expect = 2e-18
Identities = 42/46 (91%), Positives = 44/46 (95%)
Frame = +1
Query: 10 HVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 147
+VKAKIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 101 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 88.6 bits (210), Expect = 2e-18
Identities = 42/46 (91%), Positives = 44/46 (95%)
Frame = +1
Query: 10 HVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 147
+VKAKIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 177 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 88.6 bits (210), Expect = 2e-18
Identities = 42/46 (91%), Positives = 44/46 (95%)
Frame = +1
Query: 10 HVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 147
+VKAKIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 253 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 88.6 bits (210), Expect = 2e-18
Identities = 42/46 (91%), Positives = 44/46 (95%)
Frame = +1
Query: 10 HVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 147
+VKAKIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 329 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
Score = 88.6 bits (210), Expect = 2e-18
Identities = 42/46 (91%), Positives = 44/46 (95%)
Frame = +1
Query: 10 HVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 147
+VKAKIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 405 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 450
Score = 88.6 bits (210), Expect = 2e-18
Identities = 42/46 (91%), Positives = 44/46 (95%)
Frame = +1
Query: 10 HVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 147
+VKAKIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 481 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 526
>SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 381
Score = 88.6 bits (210), Expect = 2e-18
Identities = 42/46 (91%), Positives = 44/46 (95%)
Frame = +1
Query: 10 HVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 147
+VKAKIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 88.6 bits (210), Expect = 2e-18
Identities = 42/46 (91%), Positives = 44/46 (95%)
Frame = +1
Query: 10 HVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 147
+VKAKIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 101 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 88.6 bits (210), Expect = 2e-18
Identities = 42/46 (91%), Positives = 44/46 (95%)
Frame = +1
Query: 10 HVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 147
+VKAKIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 177 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 88.6 bits (210), Expect = 2e-18
Identities = 42/46 (91%), Positives = 44/46 (95%)
Frame = +1
Query: 10 HVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 147
+VKAKIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 253 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 88.6 bits (210), Expect = 2e-18
Identities = 42/46 (91%), Positives = 44/46 (95%)
Frame = +1
Query: 10 HVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 147
+VKAKIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 329 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
>SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 147
Score = 88.6 bits (210), Expect = 2e-18
Identities = 42/46 (91%), Positives = 44/46 (95%)
Frame = +1
Query: 10 HVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 147
+VKAKIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 53.6 bits (123), Expect = 8e-08
Identities = 24/44 (54%), Positives = 33/44 (75%)
Frame = +1
Query: 13 VKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 144
VK KIQ + GIPP QRL++ ++L D R+L+DYNI++ S LHL
Sbjct: 101 VKEKIQNREGIPPKVQRLLYEEEELVDNRSLADYNIKQGSILHL 144
>SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29)
Length = 142
Score = 74.9 bits (176), Expect = 3e-14
Identities = 35/39 (89%), Positives = 37/39 (94%)
Frame = +1
Query: 10 HVKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQK 126
+VKAKIQ K GIPP+QQRLIFAGKQLEDGRTLSDYNIQK
Sbjct: 103 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 141
>SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037)
Length = 150
Score = 74.1 bits (174), Expect = 6e-14
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = +1
Query: 43 IPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 147
IPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 2 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 36
>SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)
Length = 333
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/45 (46%), Positives = 27/45 (60%)
Frame = +1
Query: 13 VKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 147
VK I+AK G P +QQRL+F G+ L D T I +TLHL+
Sbjct: 97 VKYLIEAKGGYPKDQQRLVFNGQVLSDEDTFEKVGIFAGATLHLI 141
>SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11)
Length = 744
Score = 35.9 bits (79), Expect = 0.018
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +1
Query: 13 VKAKIQAKXGIPPNQQRLIFAGKQLEDGRTLSDYNIQK 126
+K++I+ K GIP + QRL F K+L D TL+ N+++
Sbjct: 32 LKSRIELKTGIPGDIQRLHFMNKELYDDATLAKVNLKQ 69
>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 1023
Score = 33.1 bits (72), Expect = 0.13
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +1
Query: 13 VKAKIQAKXG---IPPNQQRLIFAGKQLEDGRTLSDYNIQKES 132
+K KI+A G P +LI+AGK L D L +YNI ++S
Sbjct: 92 LKQKIEADKGKDAYPHGNIKLIYAGKILNDDNPLKEYNIDEKS 134
>SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05)
Length = 198
Score = 32.7 bits (71), Expect = 0.17
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +1
Query: 31 AKXGIPPNQQRLIFAGKQLEDGRTLSDYN 117
++ GIP +QRLIF GK L+D + L +++
Sbjct: 18 SEEGIPAERQRLIFKGKVLQDEKKLKEFD 46
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 32.3 bits (70), Expect = 0.22
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +1
Query: 40 GIPPNQQRLIFAGKQLEDGRTLSDYN 117
GIP +QRLIF GK L+D + L +++
Sbjct: 1 GIPAERQRLIFKGKVLQDEKKLKEFD 26
>SB_59803| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 243
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 20 LKFKPKXESLPINRG*SLLESSWKMDVPSRTTIS 121
L ++P+ E+ P+N +LL+ SW + + + T S
Sbjct: 131 LVYEPREENFPLNSNPALLKVSWTVGIDNWVTAS 164
>SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5)
Length = 635
Score = 28.3 bits (60), Expect = 3.6
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 265 ENGKIHRLRRECTGEQC 315
+ G+IH L++EC G QC
Sbjct: 106 DGGEIHNLQQECIGSQC 122
>SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1353
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 13 VKAKIQAKXGIPPNQQRLIFA-GKQLEDGRTLSDYNIQKESTLHL 144
+K + K G+ + RL+ GK++ D L DYNI T+ L
Sbjct: 90 LKTMVTNKTGLHVSVFRLVIPEGKEMFDCNLLKDYNISTGDTIRL 134
>SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 654
Score = 27.9 bits (59), Expect = 4.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 360 AVVTVLHHRHEHSGA 316
A++TV+HHRH H A
Sbjct: 525 AIITVIHHRHHHHPA 539
>SB_15135| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
Length = 794
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 253 YKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRH 354
YK D GK+ L+R C ++C ++ V D +
Sbjct: 364 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVDNN 397
>SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 951
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +1
Query: 253 YKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHS 375
YK D GK+ L+R C ++C + + C +C S
Sbjct: 515 YKCDNCGKVGHLKRVCQSKECKKXXXXQGGKPKTACHRCGS 555
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 253 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 348
YK D GK+ L+R C ++C ++ V D
Sbjct: 568 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 599
>SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
Length = 1750
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 253 YKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRH 354
YK D GK+ L+R C ++C ++ V D +
Sbjct: 207 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVDNN 240
>SB_50156| Best HMM Match : RVT_1 (HMM E-Value=7.2e-37)
Length = 493
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 253 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 348
YK D GK+ L+R C ++C ++ V D
Sbjct: 63 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 94
>SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)
Length = 1510
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 253 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 348
YK D GK+ L+R C ++C ++ V D
Sbjct: 229 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 260
>SB_39101| Best HMM Match : RVT_1 (HMM E-Value=2.4e-38)
Length = 856
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 253 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 348
YK D GK+ L+R C ++C ++ V D
Sbjct: 372 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 403
>SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38)
Length = 1425
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 253 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 348
YK D GK+ L+R C ++C ++ V D
Sbjct: 898 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 929
>SB_46071| Best HMM Match : RVP (HMM E-Value=3e-05)
Length = 403
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 253 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 348
YK D GK+ L+R C ++C ++ V D
Sbjct: 229 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 260
>SB_45108| Best HMM Match : RVT_1 (HMM E-Value=4.9e-37)
Length = 1122
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 253 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 348
YK D GK+ L+R C ++C ++ V D
Sbjct: 245 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 276
>SB_23675| Best HMM Match : zf-CCHC (HMM E-Value=0.00067)
Length = 342
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 253 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 348
YK D GK+ L+R C ++C ++ V D
Sbjct: 202 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 233
>SB_19158| Best HMM Match : zf-CCHC (HMM E-Value=0.00067)
Length = 369
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 253 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 348
YK D GK+ L+R C ++C ++ V D
Sbjct: 229 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 260
>SB_15324| Best HMM Match : RVP (HMM E-Value=8.1e-05)
Length = 415
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 253 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 348
YK D GK+ L+R C ++C ++ V D
Sbjct: 66 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 97
>SB_10983| Best HMM Match : RVP (HMM E-Value=3.8e-05)
Length = 717
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 253 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 348
YK D GK+ L+R C ++C ++ V D
Sbjct: 268 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 299
>SB_2074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1266
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 253 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 348
YK D GK+ L+R C ++C ++ V D
Sbjct: 428 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 459
>SB_16229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 524
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 348 PSLLREVSQHDGLQRRRQINKSPLACKERSR 440
PSLL V + + + +NK PL C R R
Sbjct: 325 PSLLMTVQNSNAFKFHKLLNKLPLLCNGRER 355
>SB_53217| Best HMM Match : RVT_1 (HMM E-Value=3.1e-13)
Length = 436
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 253 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 348
YK D +G + L+R C ++C ++ V D
Sbjct: 61 YKCDNSGNVGHLKRVCKSKECKETKYVEVSVD 92
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,253,384
Number of Sequences: 59808
Number of extensions: 263729
Number of successful extensions: 722
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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