Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_P14
(767 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 25 0.88
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 25 0.88
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 25 0.88
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 24 1.5
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 24 1.5
AM292372-1|CAL23184.2| 771|Tribolium castaneum gustatory recept... 24 1.5
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept... 23 3.6
EF117815-1|ABO38438.1| 535|Tribolium castaneum cryptochrome 2 p... 22 6.2
AY043293-2|AAK96034.1| 353|Tribolium castaneum homeodomain tran... 22 6.2
AF231104-1|AAF64149.1| 142|Tribolium castaneum labial protein p... 22 6.2
AF231103-1|AAF64148.1| 142|Tribolium castaneum labial protein p... 22 6.2
AM292322-1|CAL23134.1| 373|Tribolium castaneum gustatory recept... 21 8.2
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 24.6 bits (51), Expect = 0.88
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 395 IMANLGGELCPLMSSSGRLWDCYFNFFIINLFTSFNLNTNREDFSHRSAE 544
+ NL E P +S + L YFN + + +S L ++ HR+A+
Sbjct: 255 VFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNYHHRTAD 304
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 24.6 bits (51), Expect = 0.88
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 395 IMANLGGELCPLMSSSGRLWDCYFNFFIINLFTSFNLNTNREDFSHRSAE 544
+ NL E P +S + L YFN + + +S L ++ HR+A+
Sbjct: 255 VFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNYHHRTAD 304
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 24.6 bits (51), Expect = 0.88
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 395 IMANLGGELCPLMSSSGRLWDCYFNFFIINLFTSFNLNTNREDFSHRSAE 544
+ NL E P +S + L YFN + + +S L ++ HR+A+
Sbjct: 255 VFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNYHHRTAD 304
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 23.8 bits (49), Expect = 1.5
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 395 IMANLGGELCPLMSSSGRLWDCYFNFFIINLFTSFNLNTNREDFSHRSAE 544
+ NL E P S + L YFN + + +S L ++ HR+A+
Sbjct: 255 VFLNLVAEKIPTTSDAVPLIGTYFNCIMFMVASSVVLTVVVLNYHHRTAD 304
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 23.8 bits (49), Expect = 1.5
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 395 IMANLGGELCPLMSSSGRLWDCYFNFFIINLFTSFNLNTNREDFSHRSAE 544
+ NL E P S + L YFN + + +S L ++ HR+A+
Sbjct: 255 VFLNLVAEKIPTTSDAVPLIGTYFNCIMFMVASSVVLTVVVLNYHHRTAD 304
>AM292372-1|CAL23184.2| 771|Tribolium castaneum gustatory receptor
candidate 51 protein.
Length = 771
Score = 23.8 bits (49), Expect = 1.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 461 YFNFFIINLFTSFNLNT 511
+FN F+I F +FN NT
Sbjct: 414 FFNIFLITPFYNFNENT 430
>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
candidate 46 protein.
Length = 1451
Score = 22.6 bits (46), Expect = 3.6
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 231 YRLSKLESLCTLLT 272
+RLSK ++ CTL+T
Sbjct: 398 FRLSKTKTFCTLVT 411
>EF117815-1|ABO38438.1| 535|Tribolium castaneum cryptochrome 2
protein.
Length = 535
Score = 21.8 bits (44), Expect = 6.2
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +2
Query: 113 LKSAKTFECVLIM 151
LK A+TF CV ++
Sbjct: 39 LKGARTFRCVFVL 51
>AY043293-2|AAK96034.1| 353|Tribolium castaneum homeodomain
transcription factor Labialprotein.
Length = 353
Score = 21.8 bits (44), Expect = 6.2
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -2
Query: 196 WYQNLHLEQGYRLKE 152
W+QN ++Q R+KE
Sbjct: 300 WFQNRRMKQKKRMKE 314
>AF231104-1|AAF64149.1| 142|Tribolium castaneum labial protein
protein.
Length = 142
Score = 21.8 bits (44), Expect = 6.2
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -2
Query: 196 WYQNLHLEQGYRLKE 152
W+QN ++Q R+KE
Sbjct: 89 WFQNRRMKQKKRMKE 103
>AF231103-1|AAF64148.1| 142|Tribolium castaneum labial protein
protein.
Length = 142
Score = 21.8 bits (44), Expect = 6.2
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -2
Query: 196 WYQNLHLEQGYRLKE 152
W+QN ++Q R+KE
Sbjct: 89 WFQNRRMKQKKRMKE 103
>AM292322-1|CAL23134.1| 373|Tribolium castaneum gustatory receptor
candidate 1 protein.
Length = 373
Score = 21.4 bits (43), Expect = 8.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3
Query: 225 SLYRLSKLESLCTLL 269
S +RLSK +S CT +
Sbjct: 33 SYFRLSKAKSFCTFV 47
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,274
Number of Sequences: 336
Number of extensions: 3690
Number of successful extensions: 23
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -