Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_P14
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    27   3.9  
SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces pom...    27   3.9  
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    26   6.8  

>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 237 LSKLESLCTLLTPTCQWRPRTGRRSVGRPPKRWTDDLL 350
           L+K + +  LL  T      TG   +  PP  WTD LL
Sbjct: 76  LAKQKDVDLLLVDTGDLHDGTGLSDLTDPPGSWTDSLL 113


>SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 556 YRQIFC-RPVAKIFSICIKIKRCKQVNNKKVKIT 458
           Y  I C  P   IF +C K+K+CK  ++  V  T
Sbjct: 172 YLSINCDSPGPAIFEVCQKLKQCKMESSNNVGST 205


>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +2

Query: 518 EDFSHRSAEYLPIVNANAIMINNEESISHFT 610
           E F HR++ Y PI N ++    +E+ + +++
Sbjct: 266 EGFHHRASRYWPITNLDSFSTISEKELLNYS 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,191
Number of Sequences: 5004
Number of extensions: 56998
Number of successful extensions: 162
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)