Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_P14
         (767 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13133| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   3.1  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   3.1  
SB_39194| Best HMM Match : Pepsin-I3 (HMM E-Value=2.2)                 29   4.1  
SB_34339| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_58060| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_52515| Best HMM Match : Polyoma_coat2 (HMM E-Value=0.27)            28   9.5  

>SB_13133| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 395

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = +1

Query: 259 VPCSRQRASGDHGPEGVAWVGLPRGGPMIC*RSR 360
           VP  R RAS  H P    W G   GG   C R R
Sbjct: 323 VPNPRMRASSFHSPHCAPWKGRLNGGAAWCARVR 356


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = +1

Query: 259  VPCSRQRASGDHGPEGVAWVGLPRGGPMIC*RSR 360
            VP  R RAS  H P    W G   GG   C R R
Sbjct: 4979 VPNPRMRASSFHSPHCAPWKGRLNGGAAWCARVR 5012


>SB_39194| Best HMM Match : Pepsin-I3 (HMM E-Value=2.2)
          Length = 603

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/71 (22%), Positives = 31/71 (43%)
 Frame = +2

Query: 356 RENQLEIRSAEAVIMANLGGELCPLMSSSGRLWDCYFNFFIINLFTSFNLNTNREDFSHR 535
           R++ L I +A      NL  ELC + +++G       N  ++N    +    +   + HR
Sbjct: 344 RDDGLAITNATPRATENLKKELCRIFNNNGLRITIEANKQVVNFLDPYTKPNSSLQYVHR 403

Query: 536 SAEYLPIVNAN 568
            + + P +  N
Sbjct: 404 ESNHPPSITKN 414


>SB_34339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 615

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -1

Query: 335 PPLGRPTHATPSGPWSPLARWREQ 264
           PPLG  T   P  PW PL    EQ
Sbjct: 447 PPLGIQTQHVPDCPWDPLLMLEEQ 470


>SB_58060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 863

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 262 PCSRQRASGDHGPEGVAWVG 321
           P   QRA+  H  EG+ W+G
Sbjct: 410 PAVNQRATDPHATEGIGWIG 429


>SB_52515| Best HMM Match : Polyoma_coat2 (HMM E-Value=0.27)
          Length = 364

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +1

Query: 364 SARNPQRRSCYYGEPWWR 417
           SA+N QRRS Y  EP WR
Sbjct: 287 SAQNQQRRSHYLVEPGWR 304


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,068,913
Number of Sequences: 59808
Number of extensions: 416507
Number of successful extensions: 1208
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)