Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_P14
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    40   0.002
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    40   0.002
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    40   0.002
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    40   0.002
AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    36   0.024
Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z32682-4|CAA83612.1|  218|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
 Frame = +3

Query: 261 TLLTPTCQWRPRTGRRSVGRPPKRWTDDLLKVARIS*KSAAQKLLL-WRTLVEN 419
           TL+T   +WRP   +R VGRPP RWTD L K   I+ + A  +++  W T+ ++
Sbjct: 828 TLMT---EWRPYGWKRPVGRPPMRWTDSLRK--EITTRDADGEVITPWSTIAKD 876


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
 Frame = +3

Query: 261  TLLTPTCQWRPRTGRRSVGRPPKRWTDDLLKVARIS*KSAAQKLLL-WRTLVEN 419
            TL+T   +WRP   +R VGRPP RWTD L K   I+ + A  +++  W T+ ++
Sbjct: 1003 TLMT---EWRPYGWKRPVGRPPMRWTDSLRK--EITTRDADGEVITPWSTIAKD 1051


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
 Frame = +3

Query: 261 TLLTPTCQWRPRTGRRSVGRPPKRWTDDLLKVARIS*KSAAQKLLL-WRTLVEN 419
           TL+T   +WRP   +R VGRPP RWTD L K   I+ + A  +++  W T+ ++
Sbjct: 742 TLMT---EWRPYGWKRPVGRPPMRWTDSLRK--EITTRDADGEVITPWSTIAKD 790


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
 Frame = +3

Query: 261 TLLTPTCQWRPRTGRRSVGRPPKRWTDDLLKVARIS*KSAAQKLLL-WRTLVEN 419
           TL+T   +WRP   +R VGRPP RWTD L K   I+ + A  +++  W T+ ++
Sbjct: 354 TLMT---EWRPYGWKRPVGRPPMRWTDSLRK--EITTRDADGEVITPWSTIAKD 402


>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = +3

Query: 285 WRPRTGRRSVGRPPKRWTDDLLK 353
           W PR  +R VGRPP RW D L K
Sbjct: 144 WCPRDEKRPVGRPPMRWNDSLRK 166


>Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical
           protein C07A9.10 protein.
          Length = 254

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 303 RRSVGRPPKRWTDDLLK 353
           +R VG+PP RWTD L K
Sbjct: 14  KRPVGKPPMRWTDSLRK 30


>Z32682-4|CAA83612.1|  218|Caenorhabditis elegans Hypothetical
           protein M04D8.4 protein.
          Length = 218

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +2

Query: 449 LWDCYFNFFIINLFTSFNLNTNREDFSHRSAEYLPIVNANAIMINNEESISHFTF 613
           +W    N+  +N F    LN N     H S   L  +NA+ I +   +S ++F F
Sbjct: 21  IWVRLMNYIQVNYFW-LGLNENSLFAEHFSTAVLSAINASDISLIVTDSFTYFNF 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,957,632
Number of Sequences: 27780
Number of extensions: 324546
Number of successful extensions: 826
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)