Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_P13
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)                 131   6e-31
SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)            87   2e-17
SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)            70   2e-12
SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_16719| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.008
SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09)                     30   1.5  
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)             28   6.2  
SB_51448| Best HMM Match : DUF910 (HMM E-Value=9.5)                    28   8.3  
SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)            28   8.3  

>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 215

 Score =  131 bits (316), Expect = 6e-31
 Identities = 64/168 (38%), Positives = 99/168 (58%)
 Frame = +1

Query: 103 MARRYDTRTTIFSPEGRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVF 282
           M+  YD   T+FSP+G L+QVEYA EA+    T++G+   + ++L  ER+   KL  E  
Sbjct: 1   MSGSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGNNIVVLGVERKAVAKL-QEPR 59

Query: 283 FSEKIYKLNDDMVCSVAGITSDANVLTNELRLIAQRYLLQYGESIPCEQLVSWLCDVKQA 462
              KI  L+D ++ + AG+T+DA +L N+ R+  Q + L   + +  E +  ++  +KQ 
Sbjct: 60  TVRKICTLDDHVLMAFAGLTADARILVNKARVECQSHKLTVEDPVTLEYITRFIATLKQR 119

Query: 463 YTQYGGKRPFGVSILYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNS 606
           YTQ  G+RPFG+S L +G+D     +LYQ+DPSG Y  WK    G  +
Sbjct: 120 YTQSNGRRPFGISTLIVGFDFDGTPRLYQTDPSGTYHAWKVVQSGGKN 167


>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
          Length = 308

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 44/131 (33%), Positives = 75/131 (57%)
 Frame = +1

Query: 112 RYDTRTTIFSPEGRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSE 291
           RYD   + FSP+GR++QVEYA +A+ ++GT++ I   DG++   E+   +KL  E   ++
Sbjct: 136 RYDLSASQFSPDGRVFQVEYANKAVENSGTAIAIRCKDGVVFGVEKLVLSKLY-EYGANK 194

Query: 292 KIYKLNDDMVCSVAGITSDANVLTNELRLIAQRYLLQYGESIPCEQLVSWLCDVKQAYTQ 471
           +I+ ++  +  ++AG+ +D+  +    R  A  Y   YG  IP + LV+ +     A+T 
Sbjct: 195 RIFHIDTHIGMAIAGLIADSRQIVATAREEAANYRSVYGSPIPLKYLVNRVSGFIHAFTL 254

Query: 472 YGGKRPFGVSI 504
           Y   RPFG  I
Sbjct: 255 YSAMRPFGCRI 265


>SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)
          Length = 224

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 52/178 (29%), Positives = 78/178 (43%), Gaps = 1/178 (0%)
 Frame = +1

Query: 115 YDTRTTIFSPEGRLYQVEYAMEAISHAG-TSLGILATDGILLAAERRNTNKLLDEVFFSE 291
           +D   TIFSPEGRLY            G TS+GI   D                 V  ++
Sbjct: 9   FDRHITIFSPEGRLYPSRVCFSGDQPGGLTSVGIRGADSA---------------VVVTQ 53

Query: 292 KIYKLNDDMVCSVAGITSDANVLTNELRLIAQRYLLQYGESIPCEQLVSWLCDVKQAYTQ 471
           K   L            +D+       R  A  +  ++G  IP + L   + D+ Q YTQ
Sbjct: 54  KKVPLPIPQ--------ADSRSQVQRARYEAANWKYKFGYEIPVDMLCKRIADISQVYTQ 105

Query: 472 YGGKRPFGVSILYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKE 645
               RP G  ++ +G D+  G QLY++DP+G + G+KA  +G     A S L+++ K+
Sbjct: 106 NAEMRPLGCGMILIGIDEEKGPQLYKTDPAGYFCGFKACSVGVKQTEANSFLEKKVKK 163


>SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 18/33 (54%), Positives = 22/33 (66%)
 Frame = +1

Query: 478 GKRPFGVSILYMGWDKHYGYQLYQSDPSGNYGG 576
           G RPFGVS+L  GWD    Y L+Q DPS ++ G
Sbjct: 2   GVRPFGVSLLVAGWDDDRPY-LFQCDPSESFEG 33


>SB_16719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 42

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 19/28 (67%), Positives = 22/28 (78%)
 Frame = +1

Query: 610 AAVSSLKQEYKENETTLAEAQALXIKVL 693
           AAVS LKQEYKE+E +L +A  L IKVL
Sbjct: 1   AAVSLLKQEYKEDEMSLKDALTLSIKVL 28


>SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 115 YDTRTTIFSPEGRLYQVEYAMEAISHA 195
           +D   TIFSPEGRLYQV  +   +  A
Sbjct: 9   FDRHITIFSPEGRLYQVADSRSQVQRA 35



 Score = 32.7 bits (71), Expect = 0.29
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 343 SDANVLTNELRLIAQRYLLQYGESIPCEQLVSWLCDVKQAYTQYGGKRPFG 495
           +D+       R  A  +  ++G  IP + L   + D+ Q YTQ    RP G
Sbjct: 26  ADSRSQVQRARYEAANWKYKFGYEIPVDMLCKRVADISQVYTQNAEMRPLG 76


>SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09)
          Length = 720

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 180 SYKSCGNIAGYFSNGWYSFGCRTQ 251
           SYK CGN  G  SN +Y   C T+
Sbjct: 270 SYKECGNWKGDTSNNYYRHACPTE 293


>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2537

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 337  ITSDANVLTNELRLIAQRYLLQYGESIPCEQLVSWLCDVKQAYTQ 471
            +TS  N++T+ + +I+ R+LL  G  +  E L   +CD  Q   Q
Sbjct: 2002 VTSSLNIVTSLVFIISHRHLLLSGGPLFTEDLWQIVCDGLQEAVQ 2046


>SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)
          Length = 365

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 553 QTGRADNHSAYPSPYTELRLQRAFYLHIVCKLVSHHKARRLIAHKG 416
           QT R +  ++ P  Y ++ L R F  H++ +L S  K    I +KG
Sbjct: 102 QTHRPNAPASNPEDYYKINLTRVFLDHVLEQLDSRFKDDVFICYKG 147


>SB_51448| Best HMM Match : DUF910 (HMM E-Value=9.5)
          Length = 201

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 434 TNCSQGIDSPYCSRYL*AISLNSFVKTLASDVIPATEQTM 315
           TNCS+ I    C + L  I L   ++ L SD+I   +Q +
Sbjct: 124 TNCSRAIPVRSCLQILGTIVLMEIIQILKSDIINNKQQNI 163


>SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)
          Length = 921

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 253 NTNKLLDEVFFSEKIYKLNDDMVCSVAGIT 342
           N N+++ EVF S +I+K+ D M  ++  I+
Sbjct: 35  NANRIMAEVFQSNEIFKIEDGMNINIIHIS 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,572,580
Number of Sequences: 59808
Number of extensions: 507273
Number of successful extensions: 4374
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4370
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)