Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_P12
(766 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) 232 9e-78
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30) 153 2e-37
SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1) 30 1.8
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05) 29 3.1
SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083) 29 3.1
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_19684| Best HMM Match : RVT_1 (HMM E-Value=0) 28 7.2
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 28 7.2
>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
Length = 328
Score = 232 bits (567), Expect(2) = 9e-78
Identities = 104/166 (62%), Positives = 126/166 (75%)
Frame = +2
Query: 266 QVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXX 445
++AY++++GD ++ +AY+HELP +GVKVGLTNYAAAY TG
Sbjct: 95 RIAYAKLDGDRVLASAYAHELPNFGVKVGLTNYAAAYCTGLLLARRLLTMLNLHEIYTGT 154
Query: 446 XXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPG 625
EYNVE VD PGAFRC+LDVGLART+TGARVFGA+KGAVDGGL +PHS+KRFPG
Sbjct: 155 DDVNGDEYNVESVDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPHSMKRFPG 214
Query: 626 YDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFXKYIK 763
YD+ESK F+AEVHR HIFG HVAEYMRSL ++DE+S+KRQF YIK
Sbjct: 215 YDSESKDFSAEVHRNHIFGKHVAEYMRSLAEEDEESYKRQFSAYIK 260
Score = 77.0 bits (181), Expect(2) = 9e-78
Identities = 31/42 (73%), Positives = 36/42 (85%)
Frame = +2
Query: 143 RRRXGXTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 268
RR G TDYYARKRL+ QDKNKYNTPKYR +VR++NKD+ CQ
Sbjct: 17 RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQ 58
>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
Length = 113
Score = 153 bits (370), Expect = 2e-37
Identities = 69/112 (61%), Positives = 80/112 (71%)
Frame = +2
Query: 269 VAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXX 448
+AY+++EGD I+CAAY+HELPRYGVKVGLTNYAAAY TG
Sbjct: 1 IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTE 60
Query: 449 XXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPH 604
EYNVE +D PGAFRC+LDVGLART+TGARVFGA+KGAVDGGL +PH
Sbjct: 61 EVNGDEYNVESIDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPH 112
>SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)
Length = 298
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 629 DAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFXKYIK 763
D+ K+ NAE+ RA +++ ++S D+E + R+F + K
Sbjct: 157 DSSVKRGNAEIRRARFRATTISQVVQSFRSDEERNSVRKFIAHYK 201
>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
Length = 791
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 594 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 481
+RP PF+ P +RAP A PT+ P P S+
Sbjct: 356 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 393
>SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)
Length = 624
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 594 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 481
+RP PF+ P +RAP A PT+ P P S+
Sbjct: 222 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 259
>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 230 LIVRLSNKDVTCQVAYSRIEGD-HIVC 307
L++ LS +D+TC V YS G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 278 SRIEGDHIVCAAYSH-ELPRYGVKVGLTNYAAAY 376
++ GDH+ A+YSH ++ R+ V + L AAY
Sbjct: 133 AKYRGDHLDIASYSHQQIDRFAVLLDLWTNEAAY 166
>SB_19684| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 617
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -2
Query: 144 RLNLTWDRLKDCLXCTTLTKPRF*REVTKWRPQTDTKQKERND 16
++N DR + +T+TKP ++ + ++DT QKE+ D
Sbjct: 144 QINSNRDRNSEIQLTSTITKPTANQDFENQKTRSDTPQKEKAD 186
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 639 DSAS*PGNLLME*GTLRPPSTAPFIAPKTRAPV 541
D+ P +M T+RPP T F+ T+APV
Sbjct: 1653 DTTVAPETTVMPDTTMRPPKTDVFVTEATKAPV 1685
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,704,305
Number of Sequences: 59808
Number of extensions: 480393
Number of successful extensions: 1393
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1380
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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