Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_P11
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    29   0.91 
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    28   1.6  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   8.5  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    25   8.5  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    25   8.5  
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom...    25   8.5  

>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +3

Query: 234 NNIVITKIGILRSENVLFYSFEPRIEDLEYYKIGFVNLDAPEKTGVINSPNYVMNFGSFD 413
           +N+++  + I  S NV  Y  E   + +E Y+I  + +DA ++      PNY    G F 
Sbjct: 192 DNVILADLDI-ESTNVADYLHEHIHDMVERYQIDGIRIDAVKQMNPEFFPNYTSAAGVFA 250

Query: 414 IDQ 422
           I +
Sbjct: 251 IGE 253


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 420 QDRSLVYLGGNDGIFVLDTGSSQLLPYSSRGDPIESIF 533
           QD +L+    + G++    G+S  L +   G P E ++
Sbjct: 884 QDSNLIEKSSSGGVYASQPGASGYLSHDQSGSPFEDVY 921


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +3

Query: 264  LRSENVLFYSFEPRIEDLEYYKIGFVNLDAPEKTGVINSPNYVMN 398
            +  E    Y  +PRI+   +  +  V L++  K  +++SP  ++N
Sbjct: 1824 VHQEGSFLYELKPRIDQRTFLLVTVVLLESNIKQIILSSPYSIVN 1868


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +3

Query: 426 RSLVYLGGNDGIFVLDTGSSQLLPYSSRGDPIESIFYKNNVYF 554
           + ++  GG D +   + G + +    ++ DP  S     NVYF
Sbjct: 59  KKVIKRGGYDAVSATEDGWTNIAEEFNQSDPARSAGILQNVYF 101


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +3

Query: 405 SFDIDQDRSLVYLGGNDG-IFVLDTGSSQLLPYSSRGDPIESI-FYKNNVYF 554
           SFD  +D  ++ LGG  G I   D  + +LL      + +  + ++ N+ YF
Sbjct: 106 SFDYTRDGRMILLGGRKGHISAFDWRTGKLLTELHLRETVRDVKWFHNHQYF 157


>SPAC25H1.08c |||ribosome biogenesis protein
           Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/44 (29%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
 Frame = +3

Query: 405 SFDIDQDRSLVYLGGNDG-IFVLDTGSSQLL-PYSSRGDPIESI 530
           SFD + + ++++LGG+ G + V++  SS +L    ++ + +E+I
Sbjct: 248 SFDCNAEGNVLFLGGSSGKVKVVNINSSHILASLEAQTESVEAI 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,400
Number of Sequences: 5004
Number of extensions: 53333
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)