Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_P11
         (738 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006662-5|AAF39894.1|  501|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z70036-5|CAO78725.1|  712|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z70036-4|CAO78724.1|  733|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z70036-3|CAA93876.1|  757|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U41545-5|AAK39137.2|  243|Caenorhabditis elegans Tetraspanin fam...    28   7.9  

>AC006662-5|AAF39894.1|  501|Caenorhabditis elegans Hypothetical
           protein H23L24.2 protein.
          Length = 501

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 240 IVITKIGILRSENVLFYSFEPRIEDLEYYKIGFVN 344
           +   K+ +   + VLF S+ PRI+  E+ ++G+ N
Sbjct: 253 VTTAKVTLAPPQLVLFRSYAPRIDSKEFEQLGYFN 287


>Z70036-5|CAO78725.1|  712|Caenorhabditis elegans Hypothetical
           protein T01B4.2c protein.
          Length = 712

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -1

Query: 621 HIXEWS*NNRLSLQRCLCRCI*RS--KRCFCRICSRSDPRDCYKGGV 487
           H  +W+   R S++RC+ RC  RS  KR        SD   C + G+
Sbjct: 257 HSIKWAQKVRYSIRRCVKRCFRRSKLKRASTIESVASDEMPCEESGI 303


>Z70036-4|CAO78724.1|  733|Caenorhabditis elegans Hypothetical
           protein T01B4.2b protein.
          Length = 733

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -1

Query: 621 HIXEWS*NNRLSLQRCLCRCI*RS--KRCFCRICSRSDPRDCYKGGV 487
           H  +W+   R S++RC+ RC  RS  KR        SD   C + G+
Sbjct: 278 HSIKWAQKVRYSIRRCVKRCFRRSKLKRASTIESVASDEMPCEESGI 324


>Z70036-3|CAA93876.1|  757|Caenorhabditis elegans Hypothetical
           protein T01B4.2a protein.
          Length = 757

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -1

Query: 621 HIXEWS*NNRLSLQRCLCRCI*RS--KRCFCRICSRSDPRDCYKGGV 487
           H  +W+   R S++RC+ RC  RS  KR        SD   C + G+
Sbjct: 302 HSIKWAQKVRYSIRRCVKRCFRRSKLKRASTIESVASDEMPCEESGI 348


>U41545-5|AAK39137.2|  243|Caenorhabditis elegans Tetraspanin family
           protein 17 protein.
          Length = 243

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +3

Query: 525 SIFYKNNVYFVRYNDRGIVVKKGDYFKTILXYVPVNKFVIHKTDIIVF 668
           S+FYK+ VY V+ N R IV  K  Y   ++   P NK V    D + F
Sbjct: 77  SLFYKDKVYSVKENVREIV--KSKY--GVMTSEPENKMVTEFIDKLQF 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,182,040
Number of Sequences: 27780
Number of extensions: 303775
Number of successful extensions: 679
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)