Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_P11
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   4.0  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   5.2  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    22   6.9  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 713 IDSLVPANEQTEIIHENYYVSFVDNKF 633
           +D +   N + EI+H ++  S +D+KF
Sbjct: 198 LDDMYNNNTEWEIVHMSHSESTIDSKF 224


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 530 YALDRIPATAIREELTGARVQYKYSVISAQVNQ 432
           Y+  R PAT++    TGAR Q +      Q  Q
Sbjct: 776 YSTTRWPATSVITTTTGARQQQQQQQQQQQQQQ 808


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 522 ESIFYKNNVYFVRYNDRGIVVKKGDYFKTILXYVPVNKF 638
           +++F KN+  ++R  DR +    G  F+  + +VP   F
Sbjct: 284 QNVFVKNSGQWLREYDRELEDFDGRLFEFPIKFVPSYPF 322


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 174 LVNKTCYNATYLLXLDAPFRNNIVITKIG 260
           +V  T  N  Y L   +PF+N  +  K+G
Sbjct: 40  VVELTENNGLYTLKTTSPFKNTEIKFKLG 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,053
Number of Sequences: 438
Number of extensions: 4045
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)