Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_P10
(856 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0067 - 538929-539143,539306-539344,539579-539635,539727-53... 132 5e-31
10_08_0411 - 17725661-17725842,17726066-17726104,17726379-177264... 129 2e-30
03_06_0698 + 35608666-35608709,35608810-35608958,35609493-356095... 88 1e-17
08_02_0850 + 21862110-21862394,21862555-21862723,21862901-218629... 29 3.6
05_03_0564 - 15502458-15503303,15503394-15503474,15503572-155036... 28 8.3
05_03_0563 - 15493570-15494415,15494506-15494586,15494684-154947... 28 8.3
05_03_0562 - 15484733-15485578,15485669-15485749,15485847-154858... 28 8.3
>03_01_0067 -
538929-539143,539306-539344,539579-539635,539727-539875,
540298-540365,542009-542093,542185-542246,542612-542700,
543034-543088,544127-544252,544477-544576,544697-545499
Length = 615
Score = 132 bits (318), Expect = 5e-31
Identities = 71/158 (44%), Positives = 98/158 (62%), Gaps = 13/158 (8%)
Frame = +2
Query: 155 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMI 334
MN +KLKK+ VR GGKG+ RRKKK VH T TDD VN IPGIEEVN+
Sbjct: 441 MNVDKLKKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRVGVNNIPGIEEVNIF 500
Query: 335 KEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIA--- 505
K+D VI F NPK QAS+ ANT+ ++G + K+ ++LP I++QLGPD L+ L+R+A
Sbjct: 501 KDD-VVIQFQNPKVQASIGANTWVVSGTPQTKKLQDLLPTIINQLGPDNLDNLRRLAEQF 559
Query: 506 --------SSVAAPKPLEEDDEVPNLV--GNFDEASKQ 589
+ +A ++DD+VP LV F+EA+++
Sbjct: 560 QKQVPGAEAGASAGNAQDDDDDVPELVPGETFEEAAEE 597
>10_08_0411 -
17725661-17725842,17726066-17726104,17726379-17726435,
17726524-17726672,17727195-17727262,17727796-17727798
Length = 165
Score = 129 bits (312), Expect = 2e-30
Identities = 64/131 (48%), Positives = 83/131 (63%)
Frame = +2
Query: 155 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMI 334
MN +KLKK+ VR GGKG+ RRKKK VH T TDD VNTIPGIEEVN+
Sbjct: 2 MNVDKLKKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRVGVNTIPGIEEVNIF 61
Query: 335 KEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIASSV 514
K+D VI F NPK QAS+ ANT+ ++G + K+ ++LP I++QLGPD L+ L+R+A
Sbjct: 62 KDD-VVIQFLNPKVQASIGANTWVVSGTPQTKKLQDLLPSIINQLGPDNLDNLRRLAEQF 120
Query: 515 AAPKPLEEDDE 547
P +E
Sbjct: 121 QKQAPGASGEE 131
>03_06_0698 +
35608666-35608709,35608810-35608958,35609493-35609531,
35610024-35610163,35611130-35611244,35611281-35611399,
35611413-35611979
Length = 390
Score = 87.8 bits (208), Expect = 1e-17
Identities = 61/141 (43%), Positives = 73/141 (51%), Gaps = 11/141 (7%)
Frame = +2
Query: 191 VRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNP 370
VR GGKGT RRKKK VH T TDD VNTIP IEEVN+ K+D VI F NP
Sbjct: 5 VRTGGKGTVRRKKKAVHKTGTTDDKRLQSTLKRVGVNTIPAIEEVNIFKDD-LVIQFVNP 63
Query: 371 KAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRI---------ASSVAAP 523
K+ ++LPGI++QLGPD + LKRI A+ A
Sbjct: 64 -------------------KELQDVLPGIINQLGPDNMEHLKRIAEEMQKQVAAAGATAQ 104
Query: 524 KPLEEDDEVPNLV--GNFDEA 580
E DD+VP LV NF+E+
Sbjct: 105 AKEENDDDVPELVPGENFEES 125
>08_02_0850 +
21862110-21862394,21862555-21862723,21862901-21862965,
21863632-21863905,21863998-21864145,21864237-21864346,
21864440-21864495,21864568-21864624,21864733-21864876,
21865304-21865351
Length = 451
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -2
Query: 486 FKPSGPSWLRIPGSISVVCLFSPCPVIANVFAAS 385
F P GP W + PGS + +PCP A++F++S
Sbjct: 207 FYPLGPVW-QPPGSSTSKAPSAPCPPSASLFSSS 239
>05_03_0564 -
15502458-15503303,15503394-15503474,15503572-15503620,
15503786-15503828,15504576-15504633,15504720-15504858,
15504980-15505107
Length = 447
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 476 DGLNRLKRIASSVAAPKPLEEDDEVPNLVGNFDEA 580
+G + + A +P++ DDE NLV NF EA
Sbjct: 180 EGFGGMGGMGGRAARNRPMQGDDEAYNLVLNFKEA 214
>05_03_0563 -
15493570-15494415,15494506-15494586,15494684-15494732,
15494898-15494940,15495688-15495745,15495832-15495970,
15496092-15496219
Length = 447
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 476 DGLNRLKRIASSVAAPKPLEEDDEVPNLVGNFDEA 580
+G + + A +P++ DDE NLV NF EA
Sbjct: 180 EGFGGMGGMGGRAARNRPMQGDDEAYNLVLNFKEA 214
>05_03_0562 -
15484733-15485578,15485669-15485749,15485847-15485895,
15486061-15486103,15486851-15486908,15486995-15487133,
15487255-15487382
Length = 447
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 476 DGLNRLKRIASSVAAPKPLEEDDEVPNLVGNFDEA 580
+G + + A +P++ DDE NLV NF EA
Sbjct: 180 EGFGGMGGMGGRAARNRPMQGDDEAYNLVLNFKEA 214
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,615,207
Number of Sequences: 37544
Number of extensions: 365431
Number of successful extensions: 915
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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