Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_P09
(706 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 180 2e-46
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 180 2e-46
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 29 0.86
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 29 0.86
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c... 27 2.0
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 27 3.5
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 6.0
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 26 6.0
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 25 8.0
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 25 8.0
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 8.0
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 180 bits (437), Expect = 2e-46
Identities = 86/170 (50%), Positives = 122/170 (71%)
Frame = +3
Query: 192 KIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRW 371
K A++ LKGR+ EVSLADLQ D E SFRK +L E +QG++ L +F+G D+T+DKLR
Sbjct: 55 KNANDSLKGRILEVSLADLQKDE--EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRS 112
Query: 372 MVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEII 551
+V+KWQ+ IEAN +KTTDGY+ R+F IGFT++ +KT YAQ +Q+RAI +KM ++I
Sbjct: 113 LVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVI 172
Query: 552 TRDVTNSELREVVNKLIPDSIAKDIXKACHGIYPLRDVCIRKVKVLXRPR 701
++E+V KLIP+ I + I KA + IYPL++V +RKVK+L P+
Sbjct: 173 QNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPK 222
Score = 67.7 bits (158), Expect = 2e-12
Identities = 32/65 (49%), Positives = 43/65 (66%)
Frame = +2
Query: 26 MAVGKNQGLSXXXXXXVXXXLVDPFTRKXWYDVKAPSMFSKRQVGTTLVNRTQGNENCFG 205
MAVGKN+ LS + +VDPF+RK WYD+KAP+ F + VG TLVNRT G +N
Sbjct: 1 MAVGKNKRLSKGKKG-IKKRVVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNAND 59
Query: 206 RIEGK 220
++G+
Sbjct: 60 SLKGR 64
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 180 bits (437), Expect = 2e-46
Identities = 85/170 (50%), Positives = 125/170 (73%)
Frame = +3
Query: 192 KIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRW 371
K A++ LKGR+ EVSLADLQ D E +FRK +L E +QG++ L +F+G+ +T+DKLR
Sbjct: 55 KNANDSLKGRILEVSLADLQKDE--EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRS 112
Query: 372 MVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEII 551
+V+KWQT IEA+ +KTTDGY+ RVF IGFT + + +KT YAQ +Q+RAIR+KM ++I
Sbjct: 113 LVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVI 172
Query: 552 TRDVTNSELREVVNKLIPDSIAKDIXKACHGIYPLRDVCIRKVKVLXRPR 701
++ +RE+V KLIP+ I ++I +A I+PL++V +RKVK+L P+
Sbjct: 173 QNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPK 222
Score = 67.7 bits (158), Expect = 2e-12
Identities = 32/65 (49%), Positives = 43/65 (66%)
Frame = +2
Query: 26 MAVGKNQGLSXXXXXXVXXXLVDPFTRKXWYDVKAPSMFSKRQVGTTLVNRTQGNENCFG 205
MAVGKN+ LS + +VDPF+RK WYD+KAP+ F + VG TLVNRT G +N
Sbjct: 1 MAVGKNKRLSKGKKG-IKKRVVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNAND 59
Query: 206 RIEGK 220
++G+
Sbjct: 60 SLKGR 64
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 28.7 bits (61), Expect = 0.86
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Frame = +3
Query: 189 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 368
TK+A KG +V++ L+ DAE + + F I EY++ N D T K
Sbjct: 91 TKLAET--KGAAADVNI--LKRTKDAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGK-- 144
Query: 369 WMVKKWQTLIE-ANIDVKTTDGYVLRVFCIGFTNKDSLSQRK 491
+ +W ++ E + D + C+ ++ L+ K
Sbjct: 145 -FINEWDSIFEPVKSEFNLVDASLGLAKCLAIKDEQELANIK 185
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 28.7 bits (61), Expect = 0.86
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +3
Query: 222 VFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTL 395
VF+V + + D R+ + +A Q R V C H MDL + LR +V ++ L
Sbjct: 86 VFDVESREFERDLVTFRNCLE-ATVANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAIL 143
Query: 396 IEANIDVKTT 425
+E + D++TT
Sbjct: 144 LETSKDLETT 153
>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 438
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = -1
Query: 283 LRKDLSASVSACRSARETSKTLPFNPSEAIFVXLGTVDKRGADLPLAEHRRSLDIV 116
+ KD S + +A SA E +P +FV GTV +DLP+ R L ++
Sbjct: 332 VNKD-SENQNAGESADEKMSVVPLKKYSHVFVYDGTVHANQSDLPILLPRMVLRVL 386
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 389 LPFFNHPPELIGCEVHAVEVAEHITS 312
L H PEL+ C +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +2
Query: 449 LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKENV 541
LHW+ L+ +Q + P H+GQ S + NV
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNV 1194
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 113 WYDVKAPSMFSKRQVGTTLVNRTQGNENCFGRIEGKSFR 229
WY ++S + +L+ R +G N GRI G +FR
Sbjct: 292 WYSFFPRYVYSTNCMNDSLLTRLEGIGNAIGRI-GNAFR 329
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +3
Query: 366 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 503
++ W L+ T GYV+R GFT+ ++ + K +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = +3
Query: 456 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELRE 584
G T +DS+ ++ A H + R +++K E ++ D +N +++
Sbjct: 7 GITQEDSIEKKSKNVASHGEKRKVKRKK-EDLSMDGSNDGVKD 48
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 345 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 443
D T D +RWM K Q + N+D K + G +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,884,666
Number of Sequences: 5004
Number of extensions: 58771
Number of successful extensions: 153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -