Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_P09
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...   208   4e-54
Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z66497-4|CAA91284.1|  401|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.       30   1.4  
Z71259-4|CAA95788.2|  501|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical pr...    28   7.5  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score =  208 bits (507), Expect = 4e-54
 Identities = 104/171 (60%), Positives = 127/171 (74%)
 Frame = +3

Query: 189 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 368
           TKIASEGLKGRVFEVSL DL    ++E  FRKF+LIAE VQG+NVL NFH M +T DKL 
Sbjct: 53  TKIASEGLKGRVFEVSLGDLN---NSEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLC 109

Query: 369 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEI 548
            +VKKW TLIEAN  VKTTDGY LRVF I FT K     +KT Y + +++R IR +M   
Sbjct: 110 SIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGC 169

Query: 549 ITRDVTNSELREVVNKLIPDSIAKDIXKACHGIYPLRDVCIRKVKVLXRPR 701
           I ++VT  +L+EVV+KLIPDSI KDI K C  +YPL++V IRKVK++ RP+
Sbjct: 170 IEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPK 220



 Score = 67.7 bits (158), Expect = 8e-12
 Identities = 33/67 (49%), Positives = 42/67 (62%)
 Frame = +2

Query: 26  MAVGKNQGLSXXXXXXVXXXLVDPFTRKXWYDVKAPSMFSKRQVGTTLVNRTQGNENCFG 205
           MAVGKN               VDPF+RK WYD+KAP+MF+ RQVG TL+NRTQG +    
Sbjct: 1   MAVGKNNNKMGKKGGK--KKAVDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASE 58

Query: 206 RIEGKSF 226
            ++G+ F
Sbjct: 59  GLKGRVF 65


>Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical protein
            C25G4.5 protein.
          Length = 1263

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -1

Query: 394  RVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARE-TSKTL 218
            R  H    H  LS+  SMP ++  T+RP +  +  L++  + +  +   RS R   S  +
Sbjct: 1122 RKVHINGCHTLLSLALSMPSRMGETVRPSSIVSFLLHIANENNLQIVQDRSKRSWMSDFI 1181

Query: 217  PFNPSEAI 194
              N SE++
Sbjct: 1182 VLNSSESL 1189


>Z66497-4|CAA91284.1|  401|Caenorhabditis elegans Hypothetical
           protein K08F8.2 protein.
          Length = 401

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = -1

Query: 406 LASMRVCHFLTIHLSLSVVRSMPWKLQ-STLRPCTY-SAINLNLRKDLSASVSACRSARE 233
           +AS++    LT+ L L     +P  LQ   L+P T  S +  + ++  S S S+  S+  
Sbjct: 132 IASLQASSMLTVPL-LQAASHIPSMLQLCQLQPTTIQSPVYASTQQPASTSASSLFSSSS 190

Query: 232 TSKTLPFNPSEA 197
           +S   PF PSE+
Sbjct: 191 SSAFHPFRPSES 202


>U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.
          Length = 1263

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -1

Query: 394  RVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARE-TSKTL 218
            R  H    H  LS+  SMP ++  T+RP +  +  L++  + +  +   RS R   S  +
Sbjct: 1122 RKVHINGCHTLLSLALSMPSRMGETVRPSSIVSFLLHIANENNLQIVQDRSKRSWMSDFI 1181

Query: 217  PFNPSEAI 194
              N SE++
Sbjct: 1182 VLNSSESL 1189


>Z71259-4|CAA95788.2|  501|Caenorhabditis elegans Hypothetical
           protein F13G3.3 protein.
          Length = 501

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 65  YRPSTGLDFSRPPCSNTNLR 6
           Y PSTGLD  +P  SN N++
Sbjct: 379 YNPSTGLDNDKPLISNKNIK 398


>Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical
           protein B0001.7 protein.
          Length = 731

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +3

Query: 210 LKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRN 320
           L+G  + +S+ D +A TD E S +  R IAE+++ R+
Sbjct: 201 LRGCSWIMSVVDGKAQTDGEFSDKDLREIAEFIRERH 237


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,316,854
Number of Sequences: 27780
Number of extensions: 342220
Number of successful extensions: 920
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)