Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_P08
         (794 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    22   6.5  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   6.5  

>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +3

Query: 108 FNVACXKPDINIEP--KSITFKGICXPEKKMHEVLIPLYAEVDPKKSMWVNKGRLIEVLL 281
           F+  C KP     P  K ++F+ +  P +++HE  +    +V  +++++    R   VL 
Sbjct: 33  FHQKCPKPAPIYSPVSKPVSFESL--PNRRLHEEFLRSSVDVLLQEAVFEGTNRKNRVLQ 90

Query: 282 AKE 290
            +E
Sbjct: 91  WRE 93


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 339 HHWLKVDFNRWQDEDESGDDLDNMND 416
           H + K+D    +  D+  DD D+M++
Sbjct: 274 HKYEKIDKEEHESMDDDDDDDDDMSN 299


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,771
Number of Sequences: 336
Number of extensions: 3255
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21583952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)