Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_P08
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr 1||...    72   8e-14
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom...    30   0.44 

>SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 186

 Score = 72.1 bits (169), Expect = 8e-14
 Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 8/116 (6%)
 Frame = +3

Query: 63  PSVSWAQRNARXFLTFNVA--------CXKPDINIEPKSITFKGICXPEKKMHEVLIPLY 218
           P V WAQR+ +     NV            P IN+ P+ +            + V I  +
Sbjct: 8   PEVLWAQRSNKDDAEKNVIYLTVLIPDAVDPKINLTPEKLVIDSKSGANAH-YAVQIDFF 66

Query: 219 AEVDPKKSMWVNKGRLIEVLLAKEKVDEPYWPSLTSDKKKHHWLKVDFNRWQDEDE 386
            ++D +KS +   GR I  +L K+++ E +WP LT +K + HWL+ DF+RW DEDE
Sbjct: 67  KDIDVEKSKYSVTGRYIFFVLYKKELQEEFWPRLTKEKLRLHWLRTDFDRWVDEDE 122


>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +3

Query: 201 VLIPLYAEVDPKKSMWVNKGRLIEVLLAKEKVDEPYWPSL 320
           VL PLY E+ P+KS +      +E+ L K KV E  W +L
Sbjct: 233 VLDPLYEEIVPEKSSFKLFSSKVEITLIK-KVSEIKWEAL 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,652,735
Number of Sequences: 5004
Number of extensions: 50695
Number of successful extensions: 133
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)