Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_P05
(877 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom... 28 1.5
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 28 2.0
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||... 28 2.0
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 28 2.0
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch... 27 3.5
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 27 3.5
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 27 3.5
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 27 4.6
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 27 4.6
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 27 4.6
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 26 6.1
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 26 6.1
>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +1
Query: 76 QITSIIIPKKNDSPHLGHSAHCRLRAVLQTSL 171
+++S+ +PK D P+L +SA RL ++ + +L
Sbjct: 233 ELSSVTLPKSEDEPYLDYSAARRLCSINKDAL 264
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/47 (31%), Positives = 19/47 (40%)
Frame = -1
Query: 877 GAQDQFPEEGFDFFLKQRNA*NLHKXRDRCKTKENEKLPEVESRSGF 737
G D F EEG F N K +R +T + P +R GF
Sbjct: 1287 GGYDDFSEEGSYEFANMGATSNAAKETERGRTPQEMSRPATSTRDGF 1333
>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 525
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 402 WTIGLSSTRTPTRSSEGACSS*EIKTGKTCAQRFHRRS 515
WTI LS T TRS+ +CS+ T T A R +++
Sbjct: 38 WTIALSQHETETRSTRTSCST---TTESTIAMRSKQKA 72
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 176 LFSKHGVKGFT 208
LFSKHGVKGFT
Sbjct: 231 LFSKHGVKGFT 241
>SPCC1442.09 |trp3||anthranilate synthase component
I|Schizosaccharomyces pombe|chr 3|||Manual
Length = 489
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = -2
Query: 534 SFILELVNAGESVERMSF 481
SFILE V GESV R SF
Sbjct: 49 SFILESVTQGESVSRYSF 66
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 689 KVDSITEENNQFYAMGKAASTFNFRQLLI 775
KV + E +Q MG AS F FRQL I
Sbjct: 370 KVLTTQSERDQMVEMGLLASNFRFRQLSI 398
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 158 YKQAYSLFSKHGVKGFTPLPFFGNMGR 238
YKQA+SLF +HG G P G++ R
Sbjct: 8 YKQAFSLFDRHGT-GRIPKTSIGDLLR 33
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 26.6 bits (56), Expect = 4.6
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 10/124 (8%)
Frame = +2
Query: 374 ITVKDFEHFLDHRTIINKDTDPFFG--RSLFFLRDQDW----KDM-RSTLS-PAFTSSKM 529
+T++ +H RT +P FG R L+ L + + +D+ R LS PA +
Sbjct: 479 VTIEKRKHTEHIRTYTPNVIEPSFGLGRILYVLMEHAYWTRPEDVNRGVLSFPASIAPIK 538
Query: 530 KLMMPFIVEVG-QQMNKALKQRIQEAGVGY-VDIDSKDLTTRYANDVIASCAFGLKVDSI 703
L++P K L +++ G+ +D + ++ RYA + FGL VD
Sbjct: 539 ALIVPLSRNAEFAPFVKKLSAKLRNLGISNKIDDSNANIGRRYARNDELGTPFGLTVDFE 598
Query: 704 TEEN 715
T +N
Sbjct: 599 TLQN 602
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 683 GLKVDSITEENNQFYAMGKAASTFNFRQLLI-FFGLAS 793
G D++++ +GK S NF LLI FGLAS
Sbjct: 126 GKVFDALSQYATSQITLGKMISLINFNSLLITIFGLAS 163
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 153 STKAAMSTMAQMRRIIFLWYNYTRNLLTNTIINVIK 46
STK T+ R F W+ + L NTI N++K
Sbjct: 981 STKWGNHTLKITTRQTFQWHGVLKKNLRNTIRNIVK 1016
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 638 LTTRYANDVIASCAFGLKVDSITEENNQFYAMGKAA 745
L T +V+ SC FG V E N+F +G A
Sbjct: 65 LATSLDENVVVSCGFGQDVYVWNPETNEFRDLGNNA 100
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 236 RIVIKMDHFSDHIQSLYDSFPEERFVGRYEFLNPMVIIRDIELLK 370
++V +DHF D I S+ +F V + N + IRD L++
Sbjct: 507 KLVAYLDHFGDEILSI--NFDPSNAVTYINYANKVAFIRDPYLIE 549
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,393,380
Number of Sequences: 5004
Number of extensions: 71924
Number of successful extensions: 190
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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