Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_P04
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi...    28   1.5  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    27   2.0  
SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac...    27   2.7  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   4.7  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    26   6.2  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    26   6.2  

>SPBC1539.01c |||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +2

Query: 209 RLGVQIERSGAL-ISSWGCVRRV 274
           RLG+QIE       SSW CVRR+
Sbjct: 8   RLGLQIENKFVFRSSSWNCVRRI 30


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 468 IPHPTSSVYNEIESIFSIFPNPI 400
           IPH TSSV N+I S+     +PI
Sbjct: 134 IPHTTSSVSNDIPSVLGSSDHPI 156


>SPAC11D3.03c |||meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -1

Query: 450 SVYNEIESIFSIFPNPILIMGD-FNAQHVAWGSSISNHYGSRLLDMVDK 307
           S Y+ + S        + I+GD   A+H  WG  + +  G+R    +DK
Sbjct: 114 STYDRLWSTLPYLRPLVTIIGDSLQARHDEWGGRVHDTLGTRCDPYIDK 162


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = -1

Query: 573 IKNNISFSQFTIPNHSSDFSIIAITINNICYVSLYIPHP--TSSVYNEIESIFSIFPNPI 400
           I+ N+ F     PN SSD S  +    NI Y  L +P       +   + +I S+   P+
Sbjct: 645 IELNLEFGVILYPNISSDVSACSHGFMNI-YKDLNLPRSYFADCITKSVSNIDSLLNTPV 703

Query: 399 LIM 391
            I+
Sbjct: 704 KIL 706


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -1

Query: 363 WGSSISNHYGSRLLDMVDKYKWCILNT-GKATRRTQPHEEISAPDLSICTPNLASIV 196
           W  +I N +G +    +D YKW + NT G    + + H  I   DL +   N  ++V
Sbjct: 338 WKWTIENPFGFQ----IDNYKWKLFNTLGIMDYKNRLH-TICFQDLEVSIANYGALV 389


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -1

Query: 564 NISFSQFTIPNHSSDFSIIAITINNICYVSLYIPHP 457
           N++F Q  IP+ ++DF+ +A    N+ + S  IP+P
Sbjct: 220 NVTFGQPNIPSTTTDFAGLAAP--NMVHPSQAIPNP 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,593,847
Number of Sequences: 5004
Number of extensions: 49721
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)