Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_P04
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1146 + 31249488-31249722,31250145-31250236,31251158-312512...    32   0.40 
08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007           28   6.5  
05_04_0310 + 20114415-20117819                                         28   6.5  
04_03_1029 - 21835441-21835856,21836666-21836852                       28   8.6  

>04_04_1146 +
           31249488-31249722,31250145-31250236,31251158-31251209,
           31251377-31251477,31251587-31252020,31252453-31252507,
           31252614-31252667,31252774-31253190
          Length = 479

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = +3

Query: 255 GVVCDELPYQYLKYTIYTYRPYPTVESHNDY-----*WSCPMLHVEH*NLP*LRSDWEI 416
           G+VCD   ++ +++ ++   P P  +  NDY      +     H +H ++  +R DWEI
Sbjct: 359 GIVCDRHVFRIIQHWLHAGEPDPFYDPLNDYVILPTAFEIEKYHEKHGDITSVREDWEI 417


>08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007
          Length = 952

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = -1

Query: 363 WGSSISNHYGSRLLDMVDKYKWCILNTGKATRRTQPHEEISAPDLSICTPNLASIVSWNT 184
           WGS I   YG+   D+V  Y+  I           PH  I    +++ T  L  ++ W+T
Sbjct: 622 WGSDIGWVYGTVTEDVVTGYRMHIKGWRSRYCSIYPHAFIGTAPINL-TERLFQVLRWST 680


>05_04_0310 + 20114415-20117819
          Length = 1134

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 148 SDKFAXSNSG-PDXMARPENEIET*KCELVCVER 50
           SD+F   N G PD + + E+E+   + E  CVER
Sbjct: 27  SDRFRWLNGGVPDALKQLEDELNQLRAEAGCVER 60


>04_03_1029 - 21835441-21835856,21836666-21836852
          Length = 200

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -1

Query: 159 HFPXVINLPXATAARTKWRAPRMKLKLENANWFALKEEVEKVMPNRPRSTK 7
           H P    LP     R +WRAPR++    +A+   +  +  +V    PR  K
Sbjct: 109 HGPPRAPLPDLHRGREQWRAPRLRPWPVDAHNLVIHLDNARVAEQHPREKK 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,132,792
Number of Sequences: 37544
Number of extensions: 296056
Number of successful extensions: 625
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)