Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_P04
(720 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 106 3e-23
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 79 6e-15
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 61 2e-09
M38643-2|AAA28940.1| 192|Drosophila melanogaster protein ( D.me... 57 2e-08
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 57 2e-08
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 56 4e-08
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 54 3e-07
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 52 6e-07
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 52 6e-07
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 52 8e-07
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 42 8e-04
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 38 0.010
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 37 0.024
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 36 0.055
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 36 0.055
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 36 0.055
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 36 0.055
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 36 0.073
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 35 0.097
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 30 2.8
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 30 2.8
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 30 2.8
AE014296-1817|AAN11914.1| 573|Drosophila melanogaster CG32058-P... 30 2.8
X80028-1|CAA56332.1| 1126|Drosophila melanogaster dhem2 protein. 29 8.4
AY118579-1|AAM49948.1| 1126|Drosophila melanogaster LD43495p pro... 29 8.4
AE014296-3665|AAF51820.1| 1126|Drosophila melanogaster CG5837-PA... 29 8.4
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 106 bits (254), Expect = 3e-23
Identities = 76/232 (32%), Positives = 109/232 (46%), Gaps = 5/232 (2%)
Frame = -1
Query: 708 LANKYQPFLISLQETWXRPGFNFRIP-KYSCIREDRSDGYGGVALLIKNNISFSQFTIPN 532
L KY P +ISLQET + N P Y + ++ +GGV LL+ +I Q T+ N
Sbjct: 23 LIKKYSPHIISLQETHIQYTNNIPTPINYKLLTNIATNRFGGVRLLVHKSI---QHTVLN 79
Query: 531 HSSDFSIIAITINNICYVSLYIPH--PTSSVYNE-IESIFSIFPNPILIMGDFNAQHVAW 361
+ D IAI I + ++++ + PT ++ N+ + + F+I P LI GDFN H W
Sbjct: 80 ITIDIEAIAINIESKLKLNIFSTYISPTKNITNQTLHNTFNIQQTPSLITGDFNGWHHPW 139
Query: 360 GSSISNHYGSRLLDMVDKYKWCILNTGKATRRTQPHEEISAPDLSICTPNLASIVSWNTL 181
GS +N G +D +LN K+ H + DL++C+P LA W L
Sbjct: 140 GSPTTNKRGKITHRFIDNMHLILLN-DKSPTHFSTHNTYTHIDLTLCSPILAPHAKWKIL 198
Query: 180 AXR*GSXHFPXVINLPXATAARTKWRAPRMKLKLENANWF-ALKEEVEKVMP 28
GS HFP + L T K+ P KLK N F AL + K P
Sbjct: 199 NDLHGSDHFPIITTL-FPTTNPQKFYRPFFKLKEANWEQFNALTHQTNKKYP 249
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 79.0 bits (186), Expect = 6e-15
Identities = 64/234 (27%), Positives = 101/234 (43%), Gaps = 6/234 (2%)
Frame = -1
Query: 720 DIXYLANKYQPFLISLQETWXR-PGFNFRIPK-YSCIREDRS---DGYGGVALLIKNNIS 556
++ L + P ++ LQET NF PK YS + S G+ +LIK N+
Sbjct: 19 ELTLLIKDHAPDIVFLQETKLPCNSTNFICPKEYSGYFHNFSYNTSAKQGIGVLIKRNVP 78
Query: 555 FSQFTIPNHSSDFSIIAITINNIC-YVSLYIPHPTSSVYNEIESIFSIFPNPILIMGDFN 379
+ I N S S + + + V+ YIP ++I I +++GD N
Sbjct: 79 HTYRNI-NSSILCSALQLNFEQVINIVNAYIPPSQIFSSSDISEILQNLNGSTILLGDLN 137
Query: 378 AQHVAWGSSISNHYGSRLLDMVDKYKWCILNTGKATRRTQPHEEISAPDLSICTPNLASI 199
+ WGS +N G ++ ++ + +LN G T H + D+S+ +P +A +
Sbjct: 138 SWSPLWGSPRTNTRGKKIETVILENSLIVLNDGSPT-HLSTHNTFTHIDISLISPQIAHM 196
Query: 198 VSWNTLAXR*GSXHFPXVINLPXATAARTKWRAPRMKLKLENANWFALKEEVEK 37
SW+ GS HFP I++ T R P K K + ANW E EK
Sbjct: 197 CSWSISDNLHGSDHFPITIHI--NTPTRPDNTLPLPKYKTDQANWKRFNESCEK 248
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 60.9 bits (141), Expect = 2e-09
Identities = 57/214 (26%), Positives = 94/214 (43%), Gaps = 22/214 (10%)
Frame = -1
Query: 717 IXYLANKYQPFLISLQETWXRPGFNFRIPKYSCIREDRSDGYGG-VALLIKNNISFSQFT 541
I +L N + + + ETW F IP+Y+ R DR + GG VA+ + N + Q
Sbjct: 30 IKFLENNHIHIAL-INETWLTHSDRFNIPEYTIYRNDRKESRGGGVAIAVSNTLIHEQIP 88
Query: 540 -IPNHSSDFSIIAITINN---ICYVSLYIPHPTSSV----------YNEIESIF------ 421
I +H + I I ++ + S+Y TS +N ++S++
Sbjct: 89 CIKSHVIENVGIQINTDSNSSLKIYSIYFAGNTSKCIPSSCDLSWDHNHLKSLYRSDLLK 148
Query: 420 -SIFPNPILIMGDFNAQHVAWGSSISNHYGSRLLDMVDKYKWCILNTGKATRRTQPHEEI 244
S LI GDFN++H AW + +N +G L ++ D K+ IL + T H +
Sbjct: 149 ISQINGNFLICGDFNSRHRAWKCTRANGWGKILNELSDLGKFSILYPTQPTYIPHNH-KA 207
Query: 243 SAPDLSICTPNLASIVSWNTLAXR*GSXHFPXVI 142
A L +C N+ + ++ + S H P VI
Sbjct: 208 KASTLDLCLTNIPNQLANPAVMQELSSDHLPVVI 241
>M38643-2|AAA28940.1| 192|Drosophila melanogaster protein (
D.melanogaster mobileelement jockey gag-specific protein
gene, complete cds.).
Length = 192
Score = 57.2 bits (132), Expect = 2e-08
Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 6/139 (4%)
Frame = -1
Query: 669 ETWXRPGFNFRIPKYSCIREDRSDGY--GGVALLIKNNISFSQFTIPNHSSDFSIIAI-- 502
ET R G +P Y G GG A++IK+ + S T P ++D I +
Sbjct: 39 ETHMRVGQRIYLPGYLMYHAHHPSGNSRGGSAVIIKSRLCHSPLT-PISTNDRQIARVHL 97
Query: 501 --TINNICYVSLYIPHPTSSVYNEIESIFSIFPNPILIMGDFNAQHVAWGSSISNHYGSR 328
++ + ++Y+P + ++ +S+F+ N + GD+NA+H WG+ S G
Sbjct: 98 QTSVGTVTVAAVYLPPAERWIVDDFKSMFAALGNKFIAGGDYNAKHAWWGNPRSCPRGKM 157
Query: 327 LLDMVDKYKWCILNTGKAT 271
L +++ ++ +L TG+ T
Sbjct: 158 LQEVIAHGQYQVLATGEPT 176
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 57.2 bits (132), Expect = 2e-08
Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 6/139 (4%)
Frame = -1
Query: 669 ETWXRPGFNFRIPKYSCIREDRSDGY--GGVALLIKNNISFSQFTIPNHSSDFSIIAI-- 502
ET R G +P Y G GG A++IK+ + S T P ++D I +
Sbjct: 39 ETHMRVGQRIYLPGYLMYHAHHPSGNSRGGSAVIIKSRLCHSPLT-PISTNDRQIARVHL 97
Query: 501 --TINNICYVSLYIPHPTSSVYNEIESIFSIFPNPILIMGDFNAQHVAWGSSISNHYGSR 328
++ + ++Y+P + ++ +S+F+ N + GD+NA+H WG+ S G
Sbjct: 98 QTSVGTVTVAAVYLPPAERWIVDDFKSMFAALGNKFIAGGDYNAKHAWWGNPRSCPRGKM 157
Query: 327 LLDMVDKYKWCILNTGKAT 271
L +++ ++ +L TG+ T
Sbjct: 158 LQEVIAHGQYQVLATGEPT 176
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 56.4 bits (130), Expect = 4e-08
Identities = 59/229 (25%), Positives = 95/229 (41%), Gaps = 9/229 (3%)
Frame = -1
Query: 675 LQETWXRPGFNFRIPKYSCIREDRSDG--YGGVALLIKNNIS--FSQFTIPNHSSDFSI- 511
L ET +NF+I Y + DG +GG A+LI+N + F + NH SI
Sbjct: 35 LSETHLTSKYNFQIRDYHFYGTNHPDGKAHGGTAILIRNRMKHHFYKEFAENHLQATSIN 94
Query: 510 IAITINNICYVS-LYIPHPTSSVYNEIESIFSIFPNPILIMGDFNAQHVAWGSSISNHYG 334
I + N + ++ +Y P + + + F + GD+NA+H WGS + N G
Sbjct: 95 IQLDDNTLLTLAAVYCPPRFTVLEAQFLDFFQALGPHFIAAGDYNAKHTHWGSRLVNPKG 154
Query: 333 SRLLDMVDKYKWCILNTGKATRRTQPHEEISAPDL--SICTPNLA-SIVSWNTLAXR*GS 163
+L + K + + + P + PDL T N++ S+V L S
Sbjct: 155 KQLYKTIIKATNKLDHVSPGSPTYWPSDLNKLPDLIDFAVTKNISRSLVKAECLPDL-SS 213
Query: 162 XHFPXVINLPXATAARTKWRAPRMKLKLENANWFALKEEVEKVMPNRPR 16
H P +I+L A K P +L NW K+ + + P+
Sbjct: 214 DHSPVLIHL-RRYAENVK---PPTRLTSSKTNWLRYKKYISSHIELSPK 258
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 53.6 bits (123), Expect = 3e-07
Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 22/189 (11%)
Frame = -1
Query: 642 FRIPKYSCIREDRSDGYGG-VALLIKNNISFSQFT-IPNHSSDFSIIAITINN---ICYV 478
F IP+Y+ R DR + GG VA+ + N + Q I +H + I I ++ +
Sbjct: 2 FNIPEYTIYRNDRKESRGGGVAIAVSNTLIHEQIPCIKSHVIENVGIQINTDSNSSLKIY 61
Query: 477 SLYIPHPTSSV----------YNEIESIF-------SIFPNPILIMGDFNAQHVAWGSSI 349
S+Y TS +N ++S++ S LI GDFN++H AW +
Sbjct: 62 SIYFAGNTSKCIPSSCDLSWDHNHLKSLYRSDLLKISQINGNFLICGDFNSRHRAWKCTR 121
Query: 348 SNHYGSRLLDMVDKYKWCILNTGKATRRTQPHEEISAPDLSICTPNLASIVSWNTLAXR* 169
+N +G L ++ D K+ IL + T H + A L +C N+ + ++ +
Sbjct: 122 ANGWGKILNELSDLGKFSILYPTQPTYIPHNH-KAKASTLDLCLTNIPNQLANPAVMQEL 180
Query: 168 GSXHFPXVI 142
S H P VI
Sbjct: 181 SSDHLPVVI 189
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 52.4 bits (120), Expect = 6e-07
Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 8/188 (4%)
Frame = -1
Query: 675 LQETWXRPGFNFRIPKYSCIREDRSDG--YGGVALLIKNNISFSQFT-IPNHSSDFSIIA 505
L ET NF IP Y + DG +GG +LI+N I + + IA
Sbjct: 35 LSETHLTNKNNFHIPGYLFYGTNHPDGKAHGGTGILIRNRIKHHHLNNFDKNYLQSTSIA 94
Query: 504 ITINN--ICYVSLYIPHPTSSVYNEIESIFSIFPNPILIMGDFNAQHVAWGSSISNHYGS 331
+ +NN ++Y P ++ F+ + + GD+NA+H WGS + + G
Sbjct: 95 LQLNNGSTTLAAVYCPPRFPISEDQFMEFFNTLGDRFIAAGDYNAKHTHWGSRLVSPKGK 154
Query: 330 RLLDMVDK--YKWCILNTGKATR-RTQPHEEISAPDLSICTPNLASIVSWNTLAXR*GSX 160
+L + + K K ++ GK T P + D +I ++V+ LA S
Sbjct: 155 QLYNALTKPENKLDYVSPGKPTYWPADPRKIPDLIDFAITKHVPRNMVTAEALADL-SSD 213
Query: 159 HFPXVINL 136
H P +N+
Sbjct: 214 HSPVFLNM 221
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 52.4 bits (120), Expect = 6e-07
Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 6/194 (3%)
Frame = -1
Query: 591 GGVALLIKNNISFSQFT-IPNHSSDFS--IIAITINNICYVSLYIPHPTSSVYNEIESIF 421
GG A+LIKN+++ T I + +I + I + ++Y P + +E + I
Sbjct: 66 GGAAILIKNSLAHFPLTPIATAKVQLAPAVIETALGPISFGAVYCPPRFAWTTDEFKDIL 125
Query: 420 SIFPNPILIMGDFNAQHVAWGSSISNHYGSRLLDMVDKYKWCILNTGKATRRTQPHEEIS 241
F ++ GD+NA H WG+ SN G L ++V + L TG TR P+
Sbjct: 126 EEFQTKFIVAGDWNASHWLWGAGRSNQRGIALANLVLNSEVDSLATGGPTR--YPYGCRG 183
Query: 240 AP---DLSICTPNLASIVSWNTLAXR*GSXHFPXVINLPXATAARTKWRAPRMKLKLENA 70
+P D ++ T + I + + S H P VI L + K +L
Sbjct: 184 SPGYIDFAL-TKGVLGIHANISAVVELSSDHLPLVITLDAGAISYPKME----RLITRRT 238
Query: 69 NWFALKEEVEKVMP 28
N + ++E +P
Sbjct: 239 NLEVFQSQLESTLP 252
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 52.0 bits (119), Expect = 8e-07
Identities = 48/188 (25%), Positives = 78/188 (41%), Gaps = 8/188 (4%)
Frame = -1
Query: 675 LQETWXRPGFNFRIPKYSCIREDRSDG--YGGVALLIKNNISFSQFT-IPNHSSDFSIIA 505
L ET NF IP Y + DG +GG +LI+N I + + IA
Sbjct: 35 LSETHLTNKNNFHIPGYLFYGTNHPDGKAHGGTGILIRNRIKHHHLNNFDKNYLQSTSIA 94
Query: 504 ITINN--ICYVSLYIPHPTSSVYNEIESIFSIFPNPILIMGDFNAQHVAWGSSISNHYGS 331
+ +NN ++Y P ++ F+ + + GD+NA+H WGS + G
Sbjct: 95 LQLNNGSTTLAAVYCPPRFPISEDQFMEFFNTLGDRFIAAGDYNAKHTHWGSRLVTPKGK 154
Query: 330 RLLDMVDK--YKWCILNTGKATR-RTQPHEEISAPDLSICTPNLASIVSWNTLAXR*GSX 160
+L + + K K ++ GK T P + D +I ++V+ LA S
Sbjct: 155 QLYNALTKPENKLDYVSPGKPTYWPADPRKIPDLIDFAITKHVPRNMVTAEALADL-SSD 213
Query: 159 HFPXVINL 136
H P +N+
Sbjct: 214 HSPVFLNM 221
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 41.9 bits (94), Expect = 8e-04
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 8/164 (4%)
Frame = -1
Query: 603 SDGYGGVALLIKNNIS-FSQFTIPNHSSDFSIIAIT--INNICYVSLYIPHPTSSVYNEI 433
++ GGVA+ ++ + F Q I S + + + ++ + ++Y T
Sbjct: 63 NNSVGGVAVFVRTTLRHFPQRVIETRHIQLSSVKVATGLGDLQFSAIYCSPSTRIEERHF 122
Query: 432 ESIFSIFPNPILIMGDFNAQHVAWGSSISNHYGSRLLDMVDKYKWCILNTGKATRRTQ-P 256
I L+ GD+NA+H WG + ++ G L + + IL TG TR P
Sbjct: 123 TDIIRACGQRYLVGGDWNARHWLWGDTCNSPRGRELAEALSVTGAKILATGSPTRYPYVP 182
Query: 255 HEEISAPDLSI---CTPNLASIV-SWNTLAXR*GSXHFPXVINL 136
S D ++ +LA+I SW+ S H P +I++
Sbjct: 183 SHTPSCIDFAVYHGIPDHLATITQSWDL-----DSDHLPLIISI 221
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 38.3 bits (85), Expect = 0.010
Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Frame = -1
Query: 534 NHSSDFSIIAITINNICYVSL-YIPHPTSSVYNEIESIFSIFPNPILIMGDFNAQHVAWG 358
N S+ +IA C SL + PH + V N E +++ GD+NA+H WG
Sbjct: 119 NRRSEMIVIASVY---CPPSLSWSPHHFTDVLNFAEKTMG-GQTKLILCGDWNAKHRQWG 174
Query: 357 SSISNHYGSRLLDMVDKYKWC-ILNTGKATRRTQPHEEISAP---DLSIC 220
+ G+ L D + I+ TG AT PH+ +P D SIC
Sbjct: 175 CIRACQRGAALYDAIQADSMAEIVATGSATH--FPHDTRKSPSAIDFSIC 222
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 37.1 bits (82), Expect = 0.024
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Frame = -1
Query: 534 NHSSDFSIIAITINNICYVSL-YIPHPTSSVYNEIESIFSIFPNPILIMGDFNAQHVAWG 358
N S+ +IA C SL ++PH + V N E ++ GD+NA+H WG
Sbjct: 107 NRRSEMIVIASVY---CPPSLRWLPHHFTDVLNFAEKTLG-GQTKFILCGDWNAKHRQWG 162
Query: 357 SSISNHYGSRLLDMVDKYKWC-ILNTGKATRRTQPHE---EISAPDLSIC 220
+ + G+ L + V I+ TG AT PH+ SA D SIC
Sbjct: 163 CTRACQRGTALYEAVQADSTAEIIATGCATH--FPHDTRKNPSAIDFSIC 210
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 35.9 bits (79), Expect = 0.055
Identities = 43/144 (29%), Positives = 62/144 (43%), Gaps = 7/144 (4%)
Frame = -1
Query: 534 NHSSDFSIIAITINNICYVSL-YIPHPTSSVYNEIESIFSIFPNPILIMGDFNAQHVAWG 358
N S+ +IA C SL + PH + V N E ++ GD+NA+H WG
Sbjct: 107 NRRSEMIVIASVY---CPPSLSWSPHHFTDVLNFAEKTLG-GQTKFILCGDWNAKHRQWG 162
Query: 357 SSISNHYGSRLLDMVDKYKWC-ILNTGKATRRTQPHE---EISAPDLSICTPNLASIVSW 190
+ + G+ L + V I+ TG AT PH+ SA D SIC L +
Sbjct: 163 CTRACQRGTALYEAVQADPMAEIIATGCATH--FPHDTRKNPSAIDFSIC-KGLGRLEKR 219
Query: 189 NTLAXR*GSXHFPXV--INLPXAT 124
+ + S H P + INL +T
Sbjct: 220 ISSSADLSSDHLPILLEINLDTST 243
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 35.9 bits (79), Expect = 0.055
Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 5/143 (3%)
Frame = -1
Query: 534 NHSSDFSIIAITINNICYVSL-YIPHPTSSVYNEIESIFSIFPNPILIMGDFNAQHVAWG 358
N S+ +IA C SL + PH + V N E ++ GD+NA+H WG
Sbjct: 69 NRRSEMIVIASVY---CPPSLSWSPHHFTDVLNFAEKTLG-GQTKFILCGDWNAKHRQWG 124
Query: 357 SSISNHYGSRLLDMVDKYKWC-ILNTGKATRRTQPHE---EISAPDLSICTPNLASIVSW 190
+ + G+ L + V I+ TG AT PH+ SA D SIC L +
Sbjct: 125 CTRACQRGTALYEAVQADPMAEIIATGCATH--FPHDTRKNPSAIDFSIC-KGLGRLEKR 181
Query: 189 NTLAXR*GSXHFPXVINLPXATA 121
+ + S H P ++ + T+
Sbjct: 182 ISSSADLSSDHLPILLEINLDTS 204
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 35.9 bits (79), Expect = 0.055
Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 5/143 (3%)
Frame = -1
Query: 534 NHSSDFSIIAITINNICYVSL-YIPHPTSSVYNEIESIFSIFPNPILIMGDFNAQHVAWG 358
N S+ +IA C SL + PH + V N E ++ GD+NA+H WG
Sbjct: 107 NRRSEMIVIASVY---CPPSLSWSPHHFTDVLNFAEKTLG-GQTKFILCGDWNAKHRQWG 162
Query: 357 SSISNHYGSRLLDMVDKYKWC-ILNTGKATRRTQPHE---EISAPDLSICTPNLASIVSW 190
+ + G+ L + V I+ TG AT PH+ SA D SIC L +
Sbjct: 163 CTRACQRGTALYEAVQADPMAEIIATGCATH--FPHDTRKNPSAIDFSIC-KGLGRLEKR 219
Query: 189 NTLAXR*GSXHFPXVINLPXATA 121
+ + S H P ++ + T+
Sbjct: 220 ISSSADLSSDHLPILLEINLDTS 242
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 35.9 bits (79), Expect = 0.055
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -1
Query: 405 PILIMGDFNAQHVAWGSSISNHYGSRLLDMVDKYKWCILNTG 280
P +I GD NA WGS ISN G ++D ++ +LN G
Sbjct: 119 PTVIGGDLNAWATEWGSRISNTRGRAVIDAMNLLDLVLLNDG 160
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 35.5 bits (78), Expect = 0.073
Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Frame = -1
Query: 534 NHSSDFSIIAITINNICYVSL-YIPHPTSSVYNEIESIFSIFPNPILIMGDFNAQHVAWG 358
N S+ +IA C SL + PH + V N E ++ GD+NA+H WG
Sbjct: 107 NRRSEMIVIASVY---CPPSLSWSPHHFTDVLNFAEKTLG-GQTKFILCGDWNAKHRQWG 162
Query: 357 SSISNHYGSRLLDMVDKYKWC-ILNTGKATRRTQPHE---EISAPDLSIC 220
+ + G+ L + V I+ TG AT PH+ SA D SIC
Sbjct: 163 CTRACQRGTALYEAVQADPMAEIIATGCATH--FPHDTRKNPSAIDFSIC 210
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 35.1 bits (77), Expect = 0.097
Identities = 39/128 (30%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Frame = -1
Query: 486 CYVSL-YIPHPTSSVYNEIESIFSIFPNPILIMGDFNAQHVAWGSSISNHYGSRLLDMVD 310
C SL + PH + V N E ++ GD+NA+H WG + + G+ L + V
Sbjct: 4 CPPSLSWSPHHFTDVLNFAEKTLG-GQTKFILCGDWNAKHRQWGCTRACQRGTALYEAVQ 62
Query: 309 KYKWC-ILNTGKATRRTQPHE---EISAPDLSICTPNLASIVSWNTLAXR*GSXHFPXV- 145
I+ TG AT PH+ SA D SIC L + + + S H P +
Sbjct: 63 ADPMAEIIATGCATH--FPHDTRKNPSAIDFSIC-KGLGRLEKRISSSADLSSDHLPILL 119
Query: 144 -INLPXAT 124
INL +T
Sbjct: 120 EINLDTST 127
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 30.3 bits (65), Expect = 2.8
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = -1
Query: 453 SSVYNEIESIFSIFPNPILIMGDFNAQHVAWGSSISNHYGSRLLDMVDKYK-WCILNTGK 277
S ++N E + + ++ GD+N +H WG+ +S G L + K I+ TG
Sbjct: 136 SKLFNHFEMLLD-GKSKFILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGH 194
Query: 276 ATR-RTQPHEEISAPDLSIC 220
AT ++ SA D +IC
Sbjct: 195 ATHFPFDKKKQPSALDFAIC 214
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 30.3 bits (65), Expect = 2.8
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = -1
Query: 453 SSVYNEIESIFSIFPNPILIMGDFNAQHVAWGSSISNHYGSRLLDMVDKYK-WCILNTGK 277
S ++N E + + ++ GD+N +H WG+ +S G L + K I+ TG
Sbjct: 136 SKLFNHFEMLLD-GKSKFILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGH 194
Query: 276 ATR-RTQPHEEISAPDLSIC 220
AT ++ SA D +IC
Sbjct: 195 ATHFPFDKKKQPSALDFAIC 214
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 30.3 bits (65), Expect = 2.8
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = -1
Query: 453 SSVYNEIESIFSIFPNPILIMGDFNAQHVAWGSSISNHYGSRLLDMVDKYK-WCILNTGK 277
S ++N E + + ++ GD+N +H WG+ +S G L + K I+ TG
Sbjct: 136 SKLFNHFEMLLD-GKSKFILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGH 194
Query: 276 ATR-RTQPHEEISAPDLSIC 220
AT ++ SA D +IC
Sbjct: 195 ATHFPFDKKKQPSALDFAIC 214
>AE014296-1817|AAN11914.1| 573|Drosophila melanogaster CG32058-PA
protein.
Length = 573
Score = 30.3 bits (65), Expect = 2.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 252 HGVVCDELPYQYLKYTIYTYRPYPTVESH 338
HG + L ++ ++YTY+PYP VE H
Sbjct: 124 HGFI-HVLALNFMNGSLYTYKPYPKVEVH 151
>X80028-1|CAA56332.1| 1126|Drosophila melanogaster dhem2 protein.
Length = 1126
Score = 28.7 bits (61), Expect = 8.4
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = -1
Query: 576 LIKNNISFSQFTIPNHSSDFSIIAITINNICYVSLYIPHPTSSVYNEIESIFSIFPNPIL 397
L +N SF + TI HS++ +A INNI + +L+ S + + ++ ++ + +L
Sbjct: 1005 LARNENSFYRATIDGHSNNTHCMAAAINNI-FGALFTICGQSDMEDRMKEFLALASSSLL 1063
Query: 396 IMG 388
+G
Sbjct: 1064 RLG 1066
>AY118579-1|AAM49948.1| 1126|Drosophila melanogaster LD43495p protein.
Length = 1126
Score = 28.7 bits (61), Expect = 8.4
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = -1
Query: 576 LIKNNISFSQFTIPNHSSDFSIIAITINNICYVSLYIPHPTSSVYNEIESIFSIFPNPIL 397
L +N SF + TI HS++ +A INNI + +L+ S + + ++ ++ + +L
Sbjct: 1005 LARNENSFYRATIDGHSNNTHCMAAAINNI-FGALFTICGQSDMEDRMKEFLALASSSLL 1063
Query: 396 IMG 388
+G
Sbjct: 1064 RLG 1066
>AE014296-3665|AAF51820.1| 1126|Drosophila melanogaster CG5837-PA
protein.
Length = 1126
Score = 28.7 bits (61), Expect = 8.4
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = -1
Query: 576 LIKNNISFSQFTIPNHSSDFSIIAITINNICYVSLYIPHPTSSVYNEIESIFSIFPNPIL 397
L +N SF + TI HS++ +A INNI + +L+ S + + ++ ++ + +L
Sbjct: 1005 LARNENSFYRATIDGHSNNTHCMAAAINNI-FGALFTICGQSDMEDRMKEFLALASSSLL 1063
Query: 396 IMG 388
+G
Sbjct: 1064 RLG 1066
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,109,191
Number of Sequences: 53049
Number of extensions: 513993
Number of successful extensions: 1147
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3211306956
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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