Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_P04
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    66   2e-11
U88181-2|AAB42303.1|  491|Caenorhabditis elegans Dnaj domain (pr...    28   7.7  
U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 5/151 (3%)
 Frame = -1

Query: 477 SLYIP-HPTSSVYNEIESIFS-IFP--NPILIMGDFNAQHVAWGSSISNHY-GSRLLDMV 313
           ++Y+P   +SS +  + + FS IF   +  +I GD NA H AW S  S    G  L +++
Sbjct: 5   NVYVPPRSSSSNHARLMTDFSNIFQTKSKSIISGDVNAHHSAWHSEGSEDTRGRELAELI 64

Query: 312 DKYKWCILNTGKATRRTQPHEEISAPDLSICTPNLASIVSWNTLAXR*GSXHFPXVINLP 133
           D +   I+   +   R   +  IS+PD++ICT +LA+   W+TL  + GS H P  + + 
Sbjct: 65  DLHPDLIIQNEQVHTRADTYS-ISSPDITICTADLATKCHWSTL-YKLGSDHIPMKLKI- 121

Query: 132 XATAARTKWRAPRMKLKLENANWFALKEEVE 40
               A T  R  R+    + ANW   ++ +E
Sbjct: 122 --NQAATPKRPKRLVANFKKANWQLFRDHIE 150


>U88181-2|AAB42303.1|  491|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 7 protein.
          Length = 491

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 93  MKLKLENANWFALKEEVEKVMPNRP 19
           MK K+EN++W A  EE +K M   P
Sbjct: 261 MKKKVENSDWMACLEEGQKTMKFDP 285


>U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical
           protein F46H5.4 protein.
          Length = 2018

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +2

Query: 560 ILFLMRSATPPYPSDLSSRIQEYLG-ILKL 646
           +LFL+  A PPY  +LS +  EY+G +LKL
Sbjct: 816 LLFLI--ANPPYSDELSMKAFEYIGELLKL 843


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,220,222
Number of Sequences: 27780
Number of extensions: 276576
Number of successful extensions: 687
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)