Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_P04
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   2.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.7  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +2

Query: 410 GNIEKIDSISLYTLEVGCGIYR 475
           G +  ++    YT+ +G G+YR
Sbjct: 368 GTVHDVEFPGXYTMVIGSGVYR 389


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 6/39 (15%), Positives = 19/39 (48%)
 Frame = -1

Query: 504 ITINNICYVSLYIPHPTSSVYNEIESIFSIFPNPILIMG 388
           + +  +CY + ++ HP   +   +  +  I    ++++G
Sbjct: 158 LVVAEVCYFTAHVTHPRHRLCVFVAGVVFIVSGLLMLVG 196


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 51  LSTQTNSHFQVSIS 92
           LST  N+HFQV+ S
Sbjct: 683 LSTDPNTHFQVNQS 696


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,542
Number of Sequences: 438
Number of extensions: 3611
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)