Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_P03
         (377 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    22   2.3  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   7.2  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    20   7.2  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    20   7.2  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 117 RIPNICVAHFKKLNCFSLTSNK 52
           R PNIC      L  F  T+N+
Sbjct: 319 RTPNICYKLLSNLGIFPKTTNE 340


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 2   GRPMLSFKFAILKGVSNL 55
           G  MLS + A+L+GV  L
Sbjct: 101 GESMLSERAALLRGVPTL 118


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +1

Query: 151 CRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 252
           C++      +I K   N CR C  +   ++G  K
Sbjct: 74  CKAKDEGSCIIDKTHRNQCRACRLKKCQNVGMNK 107


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +1

Query: 151 CRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 252
           C++      +I K   N CR C  +   ++G  K
Sbjct: 74  CKAKDEGSCIIDKTHRNQCRACRLKKCQNVGMNK 107


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,534
Number of Sequences: 336
Number of extensions: 1471
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  7803226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)