Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_P01
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    29   0.86 
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    29   0.86 
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    28   1.1  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    27   2.6  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   4.6  
SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces...    26   6.1  

>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +3

Query: 582 HGGWPSGTRQGRYXHTTADSSD-DTITNGSRITWHTASEQV 701
           H G P G R   Y + T   S    ++NGS +TW+     V
Sbjct: 10  HWGVPKGQRTELYVYNTLTHSKVPFVSNGSNLTWYCCGPTV 50


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = +1

Query: 370 RLSPERDETKAIERAKNRINESLNAVADEKKKVQVDENELGPNILADRRNKLETASQGWR 549
           R + E+ + +A E+AK    E+    A+EK K + +EN       A+ + K ET     R
Sbjct: 643 REAEEKAKREAEEKAKREAEENAKREAEEKAKREAEENAKRE---AEEKVKRETEENAKR 699

Query: 550 K 552
           K
Sbjct: 700 K 700



 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 370 RLSPERDETKAIERAKNRINESLNAVADEKKKVQVDEN 483
           R + E+ + +A E+AK    E     A+EK K + +EN
Sbjct: 627 REAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEN 664



 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 370 RLSPERDETKAIERAKNRINESLNAVADEKKKVQVDEN 483
           R + E+ + +A E+AK    E     A+EK K + +EN
Sbjct: 563 REAEEQAKREAEEKAKREAEEKAKREAEEKAKREAEEN 600


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = -1

Query: 418 SLLFQWPWFRLSQG*DGKLWLASH*LPQPEAQQAFRRSLHLCWACPHVWRCVGLHRRPQK 239
           + +F +P+   +   DG +    +  P+   Q+ +  S    W+C  V+ C+ L R P K
Sbjct: 386 AFVFHYPFESTTLMSDGVVGSKPYVAPEVLTQKPYDPSAVDVWSCAIVYCCIALKRFPWK 445

Query: 238 I 236
           +
Sbjct: 446 V 446


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +1

Query: 400 AIERAKNRINESLNAVADEKKKVQVDENELGPNILADRRNKLETASQGWRKRVPXNDAT 576
           AIE  +N +  S N+  +++    +DEN   P I   R+ ++ T      K +    A+
Sbjct: 38  AIELLENNVGSSKNSYQEDEGSSSIDEN--APLISIKRKRRIRTVKSTSNKELVQRKAS 94


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 382  ERDETKAIERAKNRINESLNAVADEKKKVQVDEN 483
            ERDE    +RAKN+++    A  ++  K ++DE+
Sbjct: 1845 ERDEDIPNKRAKNKVSTDQTAADNKVTKPRLDES 1878


>SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/66 (19%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +1

Query: 424 INESLNAVADEKKKVQVDENEL--GPNILADRRNKLETASQGWRKRVPXNDATMFTVAGR 597
           ++  L  V  E  +V  D  +L     ++ +R+N+    +Q W +R   + +   T+  +
Sbjct: 50  VDVELPGVKKEDVQVHYDSGKLTISGEVVNERKNESTEGNQRWSERRFGSFSRTITIPAK 109

Query: 598 LERDKV 615
           ++ D++
Sbjct: 110 IDADRI 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,222
Number of Sequences: 5004
Number of extensions: 47643
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)