Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_P01
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026)                  29   2.8  
SB_5843| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29)                  29   4.9  
SB_29511| Best HMM Match : CHGN (HMM E-Value=0.00037)                  29   4.9  
SB_4107| Best HMM Match : M (HMM E-Value=8e-22)                        29   4.9  
SB_46225| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00052)        28   6.5  
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)               28   6.5  
SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_7216| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.5  
SB_38362| Best HMM Match : BRCT (HMM E-Value=0)                        28   8.5  

>SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1449

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 385 RDETKAIER-AKNRINESLNAVADEKKKVQVDENELGPN 498
           + E KA E+ AK   +++ N    E+KK ++DE  L PN
Sbjct: 35  KSEKKAKEKEAKQEASKAKNPGQGEEKKKEIDEESLDPN 73


>SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026)
          Length = 1080

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
 Frame = -2

Query: 453 ICDSVQRFIYSVLC-SFNGLGFVSLRAETANSGSPVISSRSLKRSKPFGDRYTSV--GHV 283
           +   + + +  V C  F   G +S  A +  S SPV+  +       +G   + +  G  
Sbjct: 437 VAPKILQILLGVFCLDFVQSGVISTLAGSDVSLSPVVQYKYFIMVSLWGLSLSRIYLGAA 496

Query: 282 RMCGAALDSTADLRRYWIHPFLSIMN 205
            +C A L  T  +R+ WI   +S+M+
Sbjct: 497 EVCRAGLSDTLIVRKTWIMLIISVMH 522


>SB_5843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +2

Query: 308 SPKGLLRFRLRELMTGEPEFAVSALRETKPRP 403
           SPK +LR ++R   T + EFA++  R+TK RP
Sbjct: 21  SPK-MLRGKVRGSGTRKKEFAITTARQTKERP 51


>SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29)
          Length = 462

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +1

Query: 370 RLSPERDETKAIERAKNRINESLNAVADEKKKVQVDENELGPNILADRRNKLETASQGWR 549
           R + +R E K  E  KNR ++        + + +    E G N    +R ++ET  +G +
Sbjct: 147 RNTRKRQEQKTPEEGKNRKHQKKARTKTTRSRQEQKTPEEGKNKNHQKRARIETPEEGEK 206

Query: 550 KR 555
           K+
Sbjct: 207 KK 208


>SB_29511| Best HMM Match : CHGN (HMM E-Value=0.00037)
          Length = 955

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = -2

Query: 372 TANSGSPVISSRSLKRSKPFGDRYTSVG--HVRMCGAALDSTA-DLRRYWIHPFLSIMNN 202
           T +S  P IS   + + KP+  +    G  +V +  A   ST  DLRR W +P    +  
Sbjct: 126 TPHSRDPDISHTKISKWKPYQWKREMRGQLNVHVWQAWCGSTVHDLRRNWFYPLYPDLRL 185

Query: 201 NRSHFITKYLKIDH 160
               F+ ++ + D+
Sbjct: 186 TVKRFVVQHFENDY 199


>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
          Length = 2039

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 391 ETKAIERAKNRINESLNAVADEKKKVQVDENEL 489
           E + +E+ +  +NE +  ++ EK+K+Q   NEL
Sbjct: 521 EKQNLEKMRQSLNEQVEGLSAEKEKLQAANNEL 553


>SB_46225| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00052)
          Length = 649

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +1

Query: 355 RARVCRLSPERDETKAIERAKNRINESLNAVADEKKKVQVDENELGPNILADRRNKLETA 534
           +A+   ++  + +T  + + +  I   L AV D+K +V+  +  L   I   R+N L+ A
Sbjct: 111 KAKEDEINTLKQDTVRLTKMREAIQRRLRAVEDQKLEVEQQKETLKGQIAGLRKNLLKAA 170


>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
          Length = 690

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 430 ESLNAVADEKKKVQVDENELGPNIL-ADRRNKLETASQGWRKRVPXNDATMFTV 588
           + + ++A E+ +   DE++    I  A+ RNK E   + WRK++    AT F V
Sbjct: 604 KKIPSLAGERWREMSDEDKKPYTIQEAEERNKYEKVMEEWRKKMTHFLATKFYV 657


>SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1845

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 6/57 (10%)
 Frame = +1

Query: 382 ERDETKAIERAKNRINES---LNAVADEKKKVQVDENELGPNI--LADRR-NKLETA 534
           E+ +TK +ER +N+I E+   ++ +A E +++Q +E     +I  L +RR N L++A
Sbjct: 807 EQAQTKVLERTRNQIQETNAKMHKLAVELERLQAEEKCTSKSINELKERRLNILQSA 863


>SB_7216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1400

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 82  TLRCRVVDYQDATSHREMTPH 20
           TLR R+VD +    H+EMT H
Sbjct: 925 TLRKRIVDLEQQLEHKEMTNH 945


>SB_38362| Best HMM Match : BRCT (HMM E-Value=0)
          Length = 1572

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = +1

Query: 379  PERDET--KAIERAKNRINES-LNAVADEKKKVQVDENELGPNILADRRNKLETASQGWR 549
            P R+E    A+   K  +++S L A  +E   V+   +E G  +  ++ NKL TA++ WR
Sbjct: 1371 PNRNEKYLAAMAAGKWVLHKSYLEASREEGVFVREAPHEWGVEVAGEQPNKLATAAKRWR 1430

Query: 550  KRV 558
             R+
Sbjct: 1431 CRL 1433


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,472,899
Number of Sequences: 59808
Number of extensions: 381151
Number of successful extensions: 1138
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)