Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_P01
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68298-7|CAA92604.1|  447|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U97002-3|AAB52263.1| 1085|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U21321-8|AAG00045.1|  296|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z75552-1|CAA99941.1|  920|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AL032654-2|CAA21718.1|  257|Caenorhabditis elegans Hypothetical ...    29   4.3  
AL132904-25|CAB81956.2|  434|Caenorhabditis elegans Hypothetical...    28   7.5  
AC025727-9|ABD63208.1|  146|Caenorhabditis elegans Hypothetical ...    28   7.5  
AC025727-8|AAG23390.2|  223|Caenorhabditis elegans Hypothetical ...    28   7.5  
AC024776-20|AAK68473.2|  460|Caenorhabditis elegans Nuclear horm...    28   7.5  
U41554-1|AAA83296.2|  556|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily a...    27   9.9  

>Z68298-7|CAA92604.1|  447|Caenorhabditis elegans Hypothetical
           protein F44D12.8 protein.
          Length = 447

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +1

Query: 355 RARVCRLSPERDETKA-IERAKNRINESLNAVADEKKKVQVDENELGPNILADRRNKLET 531
           R +V +   E+D  K  + + KN++N+SL+A     K    ++   G      ++    T
Sbjct: 92  RRKVTKEKVEKDPPKTTVRKKKNQVNQSLSAENTNAKTSSDNDERAGSKNDKPKKKNSHT 151

Query: 532 ASQGWRKR 555
           +S   R+R
Sbjct: 152 SSDSRRRR 159


>U97002-3|AAB52263.1| 1085|Caenorhabditis elegans Hypothetical protein
            K09H11.3 protein.
          Length = 1085

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 381  RAETANSGS-PVISSRSLKRSKPFGDRYTSVGHVRMCGAALDSTAD 247
            R ET+ SG    +S  SL+ + PF DR++ V  +R   AA   + D
Sbjct: 1019 RVETSMSGRLSAMSQSSLRSNDPFSDRFSDVSDLR--NAAFSESTD 1062


>U21321-8|AAG00045.1|  296|Caenorhabditis elegans Hypothetical
           protein ZK177.2 protein.
          Length = 296

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 349 DWRARVCRLSPERDETKAIERAKNRINESLNAVADEKKKVQ 471
           D+    C   PER +   +     R+  SLN    +KKKV+
Sbjct: 226 DFSKSWCGADPERHDISRLHTVAKRVGHSLNGSKRDKKKVR 266


>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
            protein Y11D7A.14 protein.
          Length = 1464

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +1

Query: 382  ERDETKAIERAKNRINESLNAVAD--EKKKVQVDE 480
            ER+ T+ IER K ++NE L    +  +K+  ++DE
Sbjct: 1047 ERNSTRKIEREKEKLNEELTTAKEIIQKQAKKIDE 1081


>Z75552-1|CAA99941.1|  920|Caenorhabditis elegans Hypothetical
           protein W04D2.1a protein.
          Length = 920

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +1

Query: 379 PERDETKAIERAKNRINESLNAVADEKKKVQVDENELGPNILA 507
           PERD  K  E A NRI   L  V  E +K+  D   L  ++LA
Sbjct: 278 PERDWRKDAETAANRICRVLK-VNQENEKMMEDYENLASDLLA 319


>AL032654-2|CAA21718.1|  257|Caenorhabditis elegans Hypothetical
           protein Y52B11A.2a protein.
          Length = 257

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = -1

Query: 187 YNEVLKNRSQAFDFFRMSVSSFEELTTRRRVVHRGTLRCRVVDYQDATSHREMTPHRG 14
           + EVL +R  AF      V S E++    R++   T  CR     + T++R MT   G
Sbjct: 131 HGEVLTDRKSAFQAHLAEVRSKEDVDRVMRILKSNTKICRAT--HNITAYRYMTEING 186


>AL132904-25|CAB81956.2|  434|Caenorhabditis elegans Hypothetical
           protein Y111B2A.5a protein.
          Length = 434

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +1

Query: 370 RLSPERDETKAIERAKNRINESLNAVADEKKKVQVDENELGPNI 501
           R + +R++ +A+E+ KN +   +   AD+  +   +E +L   I
Sbjct: 65  RANHQREKDEAVEQKKNNLESQIQCDADDDDENSTEEQKLNNEI 108


>AC025727-9|ABD63208.1|  146|Caenorhabditis elegans Hypothetical
           protein Y73E7A.1b protein.
          Length = 146

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 394 TKAIERAKNRINESLNAVADEKKKVQVDENELGPNILADRRNKLE 528
           T+A    +    E +N   +EK+K +  + E+  ++L +  NKLE
Sbjct: 18  TRAHIHIRKEDEERINRELEEKRKQEAQKIEVAGDLLVENLNKLE 62


>AC025727-8|AAG23390.2|  223|Caenorhabditis elegans Hypothetical
           protein Y73E7A.1a protein.
          Length = 223

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 394 TKAIERAKNRINESLNAVADEKKKVQVDENELGPNILADRRNKLE 528
           T+A    +    E +N   +EK+K +  + E+  ++L +  NKLE
Sbjct: 95  TRAHIHIRKEDEERINRELEEKRKQEAQKIEVAGDLLVENLNKLE 139


>AC024776-20|AAK68473.2|  460|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 274 protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = +1

Query: 379 PERDETK--AIERAKNR---INESLNAVADEKKKVQVDENE 486
           PE D  K  A  +AK     +NESLN V    K +Q+DE+E
Sbjct: 285 PEEDARKENAATKAKLHPLFVNESLNCVGYPFKNLQIDEHE 325


>U41554-1|AAA83296.2|  556|Caenorhabditis elegans Hypothetical
           protein F57C12.2 protein.
          Length = 556

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 388 DETKAIERAKNRINESLNAVADEKKKVQVDENELGPNILADRRNK 522
           D    IE  K  IN+ LN    + K+ Q + N+L  N  +D RN+
Sbjct: 95  DAKTKIENQKKEINK-LNEKVTQLKEEQQNSNQLSKNNESDMRNE 138


>AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 203 protein.
          Length = 1220

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 136 SVSSFEELTTRRRVVHRGTLRCRVVDYQDATSHREMT 26
           +V SFE   T RRV    ++ C +V   D  S+ E+T
Sbjct: 768 NVQSFEHKMTPRRVAVHPSMPCLIVIETDHASYTEVT 804


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,836,192
Number of Sequences: 27780
Number of extensions: 285205
Number of successful extensions: 843
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)