Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_O24
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...   157   2e-39
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    27   2.6  
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    26   4.5  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    26   4.5  

>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score =  157 bits (380), Expect = 2e-39
 Identities = 79/185 (42%), Positives = 107/185 (57%), Gaps = 2/185 (1%)
 Frame = +3

Query: 147 LIIQIITGLFLTIYYTANIEIAFYRVNYICRNVNYG*IIRTLHANGASXFFICIYLHIGR 326
           L+IQI+ G+ L  +Y  N+++AF  V  I R+VNYG ++R  HANGAS FFI +YLHIGR
Sbjct: 40  LVIQIVIGILLACFYIPNMDLAFLSVERIVRDVNYGFLLRAFHANGASFFFIFLYLHIGR 99

Query: 327 GIYYESFXLKYV*LXXXXXXXXXXXXXXXX--YVLP*GQISFWGATVITNLLSAIPYLGT 500
           G+YY S+                         Y LP  Q+SFWGATVITNLLSA+P++G 
Sbjct: 100 GLYYGSYKYPRTMTWNIGVIIFLLTIITAFLGYCLPANQMSFWGATVITNLLSAVPFIGD 159

Query: 501 ILVN*I*GGFAVDNATLTRFYTXXXXXXXXXXXXXXXXXXXXXQTGSNNPLGLNRNLDKI 680
            LV+ + GGF+V N TL RF++                       GS+NPLG+  N+D+I
Sbjct: 160 DLVHLLWGGFSVSNPTLNRFFSLHYLMPFVIAALSVMHLIALHTNGSSNPLGVTANMDRI 219

Query: 681 PFHPF 695
           P +P+
Sbjct: 220 PMNPY 224


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +2

Query: 368 NWNYNFIYTNSNCFHRLCLTLRSNIFLGGXRNYK 469
           NWN      +SN  +RLC TL  + FL G  NYK
Sbjct: 132 NWNRLLQLDSSNLEYRLCFTL--SAFLSG--NYK 161


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +2

Query: 395 NSNCFHRLCLTLRSNIFLGGXRNYKSIICNPLFR 496
           N  C+H++C +    IF  G     +  CN + R
Sbjct: 31  NPECYHKMCESCVDRIFTTGPAQCPTPGCNKILR 64


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +2

Query: 368 NWNYNFIYTNSNCFHRLCLTLRSNIFLGGXRNYKSIICNPLFRNYISKLNLR 523
           N +Y F + N      + L+  S + L      + I+CN L R+ +   N +
Sbjct: 45  NTSYTFPFENHKNISHIALSPTSTLLLSVDEEGRCILCNFLRRSVLHYFNFK 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,308,604
Number of Sequences: 5004
Number of extensions: 40581
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)