Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_O22
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    52   7e-08
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    27   2.8  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    27   3.7  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    25   8.6  

>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 52.4 bits (120), Expect = 7e-08
 Identities = 41/191 (21%), Positives = 83/191 (43%), Gaps = 18/191 (9%)
 Frame = +2

Query: 218 VTEVPSSLKQLARLVVRGFYTIEDALIVDMLVRNPCMKEDDICELLKFER---------- 367
           ++  P  +++L ++++R FY     + +D ++R+       I  +L F R          
Sbjct: 1   MSNAPEIVQRLIKMIMRAFYETRHIIFMDAILRHSAYVLHKIRTILTFGRLTDEQTALLM 60

Query: 368 ----KMLRARISILKNDKF--IQVRLKMETGLDGKAQKVNYYFINYKTFVNVVKYKLDLM 529
               K  R     L+ D+   IQ R +M+ G   +     Y++I++ + ++ +K+++  +
Sbjct: 61  GIPIKECRFIAGKLREDRLLAIQSRTEMKEGQQ-RQYHTTYFYIDFCSTIDSIKWRMHQL 119

Query: 530 RKRLETEERDATSRASFKCPACGKTFTDLEADQLYDMATQE--FQCTFCSAVVDEDMSAL 703
            K +E   R+      + CP C K F+ L+   +  + T E  F C  C   + +D  + 
Sbjct: 120 VKTVEDRMRNDFDSKGYVCPFCNKKFSSLD---VLSLVTNEGTFACNVCGTELKDDEESA 176

Query: 704 PKKDSXLLLAK 736
               S   L K
Sbjct: 177 EMMSSQKRLGK 187


>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 25/96 (26%), Positives = 44/96 (45%)
 Frame = +2

Query: 296 IVDMLVRNPCMKEDDICELLKFERKMLRARISILKNDKFIQVRLKMETGLDGKAQKVNYY 475
           I+   ++N C  +  I +LLK +R  L+  +S + N  F ++R +     D   QK    
Sbjct: 87  ILSQFMQNICFHDFTIQDLLKPDRNRLQLILSAVIN--FAKLREERLQQFDDDIQKRESL 144

Query: 476 FINYKTFVNVVKYKLDLMRKRLETEERDATSRASFK 583
               +T+  +   + DL  K L +++R   S A  K
Sbjct: 145 L---ETYTLLDAQRKDLEEKVLLSQDRKLESEAIIK 177


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 458 QKVNYYFINYKTFVNVVKYKLDLMRKRLETEERD 559
           QK++YY  NY TF+ V   +   + K+   +E+D
Sbjct: 495 QKLDYYSGNYDTFLKVRAERDVQLAKKARQQEKD 528


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 99  TTTKLEEISIPESPRTTT 152
           TTT L  +++ ESPRT T
Sbjct: 387 TTTSLSNMTVAESPRTDT 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,206
Number of Sequences: 5004
Number of extensions: 55101
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)