Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_O22
(744 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0299 + 15487202-15487227,15487369-15487491,15488277-154883... 48 6e-06
12_01_0268 - 1941515-1941534,1941868-1942057,1942155-1942322,194... 45 7e-05
11_01_0223 + 1746203-1746228,1746344-1746463,1746942-1747062,174... 40 0.002
11_01_0222 + 1740828-1740830,1741109-1741218,1741304-1741487,174... 38 0.011
11_04_0224 + 15059904-15059910,15059955-15060185,15060345-150604... 31 0.97
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85... 29 2.9
03_05_0859 - 28329837-28329919,28330062-28330131,28330498-283305... 28 9.0
>08_02_0299 +
15487202-15487227,15487369-15487491,15488277-15488397,
15488572-15488700,15489954-15490063,15490139-15490322,
15491155-15491346,15492190-15492411,15492501-15492687,
15494009-15494103
Length = 462
Score = 48.4 bits (110), Expect = 6e-06
Identities = 36/165 (21%), Positives = 74/165 (44%), Gaps = 24/165 (14%)
Frame = +2
Query: 293 LIVDMLVRNPCMKEDDICELLKFERKMLRARISILKNDKFIQVRLKMETGL--------- 445
+++D L R ++E+D+ + LK K LR + + +K + + E+
Sbjct: 43 VVLDALTRRQWVREEDLAKALKLHSKQLRRILRFFEEEKLVTRDHRKESAKGAKIYSAAA 102
Query: 446 ----DGKA------QKV-----NYYFINYKTFVNVVKYKLDLMRKRLETEERDATSRASF 580
DG++ +KV +Y ++Y +VV+Y++ M+K+L+ E + +
Sbjct: 103 AAAGDGQSITKEGEEKVKMHTHSYCCLDYAQICDVVRYRIHRMKKKLKDELDSRNTIQHY 162
Query: 581 KCPACGKTFTDLEADQLYDMATQEFQCTFCSAVVDEDMSALPKKD 715
CP C K ++ +A QL + F C C+ + + L ++
Sbjct: 163 ICPNCKKRYSAFDALQLISYTDEYFHCENCNGELVAESDKLASEE 207
>12_01_0268 - 1941515-1941534,1941868-1942057,1942155-1942322,
1943425-1943568,1944284-1944443,1944512-1944621,
1944900-1945019,1945649-1945766,1946610-1946729,
1947228-1947285,1947590-1947723,1949332-1949414,
1949544-1949786,1949851-1949976,1950075-1951562
Length = 1093
Score = 44.8 bits (101), Expect = 7e-05
Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 20/146 (13%)
Frame = +2
Query: 293 LIVDMLVRNPCMKEDDICELLKFERKMLRARISILKNDKFIQ-VRLKMETGLD------- 448
+++D L R + + + + LK ++K L + L+ F++ +K +TG +
Sbjct: 744 MVLDALTRYQWVPDTHLAKSLKVQKKKLCLILEFLEKQMFVRRCEVKAKTGRNVSNTATT 803
Query: 449 ------GKAQKVN------YYFINYKTFVNVVKYKLDLMRKRLETEERDATSRASFKCPA 592
+ +KV Y INY +VV+Y + M L+++ + + + CP
Sbjct: 804 AGVSAIPRNEKVKSKHPKWYCCINYAKICSVVRYHIMQMEANLKSQLENTNTVDKYTCPN 863
Query: 593 CGKTFTDLEADQLYDMATQEFQCTFC 670
CGK+F+ + L F C C
Sbjct: 864 CGKSFSAFDVKDLVSCTDGNFYCESC 889
>11_01_0223 +
1746203-1746228,1746344-1746463,1746942-1747062,
1747441-1747572,1748266-1748375,1748465-1748648,
1749153-1749305,1749672-1749818
Length = 330
Score = 40.3 bits (90), Expect = 0.002
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Frame = +2
Query: 437 TGLDGKAQKVN--YYFINYKTFVNVVKYKLDLMRKRLETEERDATSRASFKCPACGKTFT 610
T + GK + + Y ++Y +V Y++ M+K+L+ E ++ CP C + ++
Sbjct: 113 TNVAGKLKMIMQPYCCLHYGQVYDVTLYRIHEMKKKLKDELDGNYMIQNYVCPNCERRYS 172
Query: 611 DLEADQLYDMATQEFQCTFCSAVVDEDMSAL 703
L A L F C C+ + +D L
Sbjct: 173 SLNALDLVSHIDNNFHCKHCNEELSQDFGDL 203
>11_01_0222 +
1740828-1740830,1741109-1741218,1741304-1741487,
1742159-1742344,1742631-1742849,1742958-1743171,
1743549-1743601,1743839-1743874
Length = 334
Score = 37.5 bits (83), Expect = 0.011
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +2
Query: 500 NVVKYKLDLMRKRLETEERDATSRASFKCPACGKTFTDLEADQLYDMATQEFQCTFC 670
+VV+Y++ MRK+L+ D + + CP C + ++ +A QL F C C
Sbjct: 4 DVVRYRIHRMRKKLKDGLDDRDTVQHYVCPNCKRRYSAFDALQLVSDMDDYFHCEHC 60
>11_04_0224 +
15059904-15059910,15059955-15060185,15060345-15060424,
15060497-15060547,15060548-15060670,15062151-15062184,
15062363-15062441,15062779-15062848,15075787-15075889,
15076247-15076284,15076449-15076550,15077027-15077107,
15077506-15077657,15077731-15077857,15078193-15078311,
15078636-15078749,15079001-15079214
Length = 574
Score = 31.1 bits (67), Expect = 0.97
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 386 ISILKNDKFIQVRLKMETGLDGKAQKVNYYFINYKTFVNVVKYKLDLMRK 535
+ I NDK ++ L + G GK + NY K + V+Y L LMR+
Sbjct: 409 LKIWANDKTVRESLGVHKGTVGKWTRCNYDIDYIKDVYSTVEYHLTLMRE 458
>02_01_0113 -
854108-854302,854399-854542,854658-854893,855036-855315,
856891-857031,857259-857372
Length = 369
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +2
Query: 446 DGKAQKVNYYFINYKTFVNVVKYKLDLMRKRLETEERDATSRASFKCPACGKTFTDLEAD 625
D A K N F+ + N V M+K E+ + P C KTFT++E
Sbjct: 144 DETATKSNRQFVCKEEGCNKVFKYASKMKKHEESHVKLDYVEVVCCEPGCMKTFTNVECL 203
Query: 626 QLYDMATQEF-QCTFC 670
+ ++ A ++ QC C
Sbjct: 204 RAHNQACHQYVQCDIC 219
>03_05_0859 -
28329837-28329919,28330062-28330131,28330498-28330549,
28330671-28330798,28331283-28331483,28332183-28332317,
28333116-28333275,28333824-28334019,28334070-28334252,
28334382-28334507,28335090-28335214,28335389-28335541,
28337267-28337472
Length = 605
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = -2
Query: 242 LNY*ELQSR--NVLPSCFTTISSMNGC 168
LN EL S+ NV SC T+++SM+GC
Sbjct: 400 LNARELSSQDYNVQTSCLTSLASMSGC 426
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,754,752
Number of Sequences: 37544
Number of extensions: 324649
Number of successful extensions: 780
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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