Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_O22
(744 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82287-4|CAB05314.1| 433|Caenorhabditis elegans Hypothetical pr... 124 9e-29
Y08816-1|CAA70050.2| 433|Caenorhabditis elegans TFIIE-alpha pro... 124 9e-29
AF003142-5|ABQ13067.1| 474|Caenorhabditis elegans Hypothetical ... 33 0.21
AF003142-4|AAK73888.1| 856|Caenorhabditis elegans Hypothetical ... 33 0.21
AL032641-4|CAA21647.1| 454|Caenorhabditis elegans Hypothetical ... 32 0.49
Z83227-4|CAB05729.2| 336|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z79755-8|CAB02113.1| 270|Caenorhabditis elegans Hypothetical pr... 30 2.0
U88311-9|AAB42349.3| 407|Caenorhabditis elegans Kinesin cargo a... 30 2.0
U63996-1|AAC47234.1| 336|Caenorhabditis elegans zinc finger pro... 30 2.0
DQ178243-1|ABA18182.1| 407|Caenorhabditis elegans kinesin 1 car... 30 2.0
AF169201-1|AAF01678.1| 270|Caenorhabditis elegans CES-1 protein. 30 2.0
AC084154-4|AAK29868.1| 767|Caenorhabditis elegans Hypothetical ... 30 2.0
Z93382-9|CAB07615.2| 462|Caenorhabditis elegans Hypothetical pr... 29 2.6
AF348168-1|AAK37546.1| 462|Caenorhabditis elegans TRF-1 protein. 29 2.6
AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical... 29 3.5
AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical ... 29 3.5
U23454-9|AAC46522.2| 249|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z79602-3|CAB01890.1| 474|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z36753-17|CAA85342.1| 821|Caenorhabditis elegans Hypothetical p... 28 6.1
AF240692-1|AAF61239.1| 821|Caenorhabditis elegans LIN-5 protein. 28 6.1
AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical ... 28 8.0
>Z82287-4|CAB05314.1| 433|Caenorhabditis elegans Hypothetical
protein ZK550.4 protein.
Length = 433
Score = 124 bits (298), Expect = 9e-29
Identities = 56/180 (31%), Positives = 110/180 (61%)
Frame = +2
Query: 203 TEERYVTEVPSSLKQLARLVVRGFYTIEDALIVDMLVRNPCMKEDDICELLKFERKMLRA 382
TE + V E+P +L + +VV+ F++ E +IV ++R C++E+++ ++F++KMLR
Sbjct: 15 TETQVVDEIPEALNTILLMVVKNFFSSEHFIIVYHIMRAQCIREENLKARIQFDQKMLRQ 74
Query: 383 RISILKNDKFIQVRLKMETGLDGKAQKVNYYFINYKTFVNVVKYKLDLMRKRLETEERDA 562
++ LK +K ++ R + + + + +Y+INY+ +NVV+YK+D MR++LE+ E+
Sbjct: 75 LLASLKAEKLVKERTITQKNENNRTVSIIFYYINYRAVLNVVRYKIDHMRQKLESREQMD 134
Query: 563 TSRASFKCPACGKTFTDLEADQLYDMATQEFQCTFCSAVVDEDMSALPKKDSXLLLAKFN 742
T+RA ++C AC ++ LE +++ D + C C V D + +P + + +A+FN
Sbjct: 135 TNRAHYRCGACQSSYDMLEINRILDAESGRLICWRCHGDVLADETVVPSRTTRTAVARFN 194
>Y08816-1|CAA70050.2| 433|Caenorhabditis elegans TFIIE-alpha
protein protein.
Length = 433
Score = 124 bits (298), Expect = 9e-29
Identities = 56/180 (31%), Positives = 110/180 (61%)
Frame = +2
Query: 203 TEERYVTEVPSSLKQLARLVVRGFYTIEDALIVDMLVRNPCMKEDDICELLKFERKMLRA 382
TE + V E+P +L + +VV+ F++ E +IV ++R C++E+++ ++F++KMLR
Sbjct: 15 TETQVVDEIPEALNTILLMVVKNFFSSEHFIIVYHIMRAQCIREENLKARIQFDQKMLRQ 74
Query: 383 RISILKNDKFIQVRLKMETGLDGKAQKVNYYFINYKTFVNVVKYKLDLMRKRLETEERDA 562
++ LK +K ++ R + + + + +Y+INY+ +NVV+YK+D MR++LE+ E+
Sbjct: 75 LLASLKAEKLVKERTITQKNENNRTVSIIFYYINYRAVLNVVRYKIDHMRQKLESREQMD 134
Query: 563 TSRASFKCPACGKTFTDLEADQLYDMATQEFQCTFCSAVVDEDMSALPKKDSXLLLAKFN 742
T+RA ++C AC ++ LE +++ D + C C V D + +P + + +A+FN
Sbjct: 135 TNRAHYRCGACQSSYDMLEINRILDAESGRLICWRCHGDVLADETVVPSRTTRTAVARFN 194
>AF003142-5|ABQ13067.1| 474|Caenorhabditis elegans Hypothetical
protein F57C9.4c protein.
Length = 474
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = +2
Query: 530 RKRLETEERDATSRASFKCPACGKTFTD---LEADQLYDMATQEFQCTFCSAVV 682
R L+T R T ++C C K+FTD L L +++QC C +
Sbjct: 404 RNFLKTHIRTHTGERPYRCDTCSKSFTDASTLRRHGLVHTGEKKYQCPVCGRAI 457
>AF003142-4|AAK73888.1| 856|Caenorhabditis elegans Hypothetical
protein F57C9.4b protein.
Length = 856
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = +2
Query: 530 RKRLETEERDATSRASFKCPACGKTFTD---LEADQLYDMATQEFQCTFCSAVV 682
R L+T R T ++C C K+FTD L L +++QC C +
Sbjct: 786 RNFLKTHIRTHTGERPYRCDTCSKSFTDASTLRRHGLVHTGEKKYQCPVCGRAI 839
>AL032641-4|CAA21647.1| 454|Caenorhabditis elegans Hypothetical
protein Y5F2A.4 protein.
Length = 454
Score = 31.9 bits (69), Expect = 0.49
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +2
Query: 527 MRKRLETEERDATSRASFKCPACGKTF---TDLEADQLYDMATQEFQCTFC 670
M K + + D ++ KC C K F + L+ Q+ + + + CTFC
Sbjct: 26 MHKNVVKSKNDRSASDPLKCSMCDKVFPRLSHLQRHQMTHLNVRNYSCTFC 76
>Z83227-4|CAB05729.2| 336|Caenorhabditis elegans Hypothetical
protein F45B8.4 protein.
Length = 336
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = +2
Query: 539 LETEERDATSRASFKCPACGKTF---TDLEADQLYDMATQEFQCTFC 670
LE ++ S F+C CGKTF + L L T+ + C +C
Sbjct: 141 LEQHQQVHVSDKQFECKQCGKTFKRSSTLSTHLLIHSDTRPYPCEYC 187
>Z79755-8|CAB02113.1| 270|Caenorhabditis elegans Hypothetical
protein F43G9.11 protein.
Length = 270
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Frame = +2
Query: 539 LETEERDATSRASFKCPACGKTFTD---LEADQLYDMATQEFQCTFC 670
L+ R T F C CGK+F D L A L + F+C C
Sbjct: 206 LQGHLRSHTGLRPFSCAHCGKSFADRSNLRAHMLTHTGDKRFECDKC 252
>U88311-9|AAB42349.3| 407|Caenorhabditis elegans Kinesin cargo
adaptor protein 1 protein.
Length = 407
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 284 EDALIVDMLVRNPCMKEDDICELLKFERKMLRARISILKNDKF 412
+D VD +++ C + +D+ + KF K R +S +KND+F
Sbjct: 76 QDKETVDEIMK--CFRNNDVDGMEKFVEKKTRESVSSMKNDEF 116
>U63996-1|AAC47234.1| 336|Caenorhabditis elegans zinc finger
protein PAG-3 protein.
Length = 336
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = +2
Query: 539 LETEERDATSRASFKCPACGKTF---TDLEADQLYDMATQEFQCTFC 670
LE ++ S F+C CGKTF + L L T+ + C +C
Sbjct: 141 LEQHQQVHVSDKQFECKQCGKTFKRSSTLSTHLLIHSDTRPYPCEYC 187
>DQ178243-1|ABA18182.1| 407|Caenorhabditis elegans kinesin 1 cargo
adaptor alternativevariant a protein.
Length = 407
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 284 EDALIVDMLVRNPCMKEDDICELLKFERKMLRARISILKNDKF 412
+D VD +++ C + +D+ + KF K R +S +KND+F
Sbjct: 76 QDKETVDEIMK--CFRNNDVDGMEKFVEKKTRESVSSMKNDEF 116
>AF169201-1|AAF01678.1| 270|Caenorhabditis elegans CES-1 protein.
Length = 270
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Frame = +2
Query: 539 LETEERDATSRASFKCPACGKTFTD---LEADQLYDMATQEFQCTFC 670
L+ R T F C CGK+F D L A L + F+C C
Sbjct: 206 LQGHLRSHTGLRPFSCAHCGKSFADRSNLRAHMLTHTGDKRFECDKC 252
>AC084154-4|AAK29868.1| 767|Caenorhabditis elegans Hypothetical
protein Y22D7AR.7 protein.
Length = 767
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 401 NDKFIQVRLKMETGLDGKA-QKVNYYFINYKTFVNVVKYKLDLMRKRLETEE 553
N +++R ++ G+ G + Y+F N+ TF++ K +D M+ ET+E
Sbjct: 97 NSMIVKLRDTLKFGIIGDMIEMAPYFFKNFDTFLSDFKKLIDAMKALRETKE 148
>Z93382-9|CAB07615.2| 462|Caenorhabditis elegans Hypothetical
protein F45G2.6 protein.
Length = 462
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 557 DATSRASFKCPACGKTF--TDLEADQLYDMATQEFQCTFCSAVV-DEDMSALPK 709
+ T ++S KC CG+ F DLE + C+FC+ + D D PK
Sbjct: 102 ECTFKSSLKCEKCGRQFAKNDLEKHRA-KCELNRAVCSFCNKTIRDSDRERHPK 154
>AF348168-1|AAK37546.1| 462|Caenorhabditis elegans TRF-1 protein.
Length = 462
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 557 DATSRASFKCPACGKTF--TDLEADQLYDMATQEFQCTFCSAVV-DEDMSALPK 709
+ T ++S KC CG+ F DLE + C+FC+ + D D PK
Sbjct: 102 ECTFKSSLKCEKCGRQFAKNDLEKHRA-KCELNRAVCSFCNKTIRDSDRERHPK 154
>AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical
protein Y111B2A.10b protein.
Length = 312
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Frame = +2
Query: 509 KYKLDLMRKRLETEERDATSRASFKCPACGKTFTDLEA-----DQLYDMATQEFQCTFC 670
++K++ ++ ++ + T+ + F C C K F + EA DQ++D++ + +C C
Sbjct: 5 QWKVEQKQQLEDSLLKPHTAGSIFTCVMCSKAFPNAEALQIHTDQVHDLSRLKHRCKLC 63
>AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical
protein Y111B2A.10a protein.
Length = 430
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Frame = +2
Query: 509 KYKLDLMRKRLETEERDATSRASFKCPACGKTFTDLEA-----DQLYDMATQEFQCTFC 670
++K++ ++ ++ + T+ + F C C K F + EA DQ++D++ + +C C
Sbjct: 123 QWKVEQKQQLEDSLLKPHTAGSIFTCVMCSKAFPNAEALQIHTDQVHDLSRLKHRCKLC 181
>U23454-9|AAC46522.2| 249|Caenorhabditis elegans Hypothetical
protein C10A4.8 protein.
Length = 249
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Frame = +2
Query: 476 FINYKTFVNVVKYKLDLMRKR------LETEERDATSRASFKCPACGKTFT---DLEADQ 628
++++ N+ KY+ D+ K L T +R T FKC CG+ F +L +
Sbjct: 156 YVDHSQKGNLKKYRCDVCDKTFSRSNTLITHKRIHTGEKPFKCEHCGRAFRQPGNLTRHR 215
Query: 629 LYDMATQEFQCTFC 670
L + + C C
Sbjct: 216 LTHTTVKPYVCGLC 229
>Z79602-3|CAB01890.1| 474|Caenorhabditis elegans Hypothetical
protein K09E9.3 protein.
Length = 474
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 515 KLDLMRKRLETEERDATSRASFKCPACGKTF 607
KLD+M +RLE E D T AS + + KTF
Sbjct: 214 KLDVMHQRLEEEMNDFTVDASLQPHSFEKTF 244
>Z36753-17|CAA85342.1| 821|Caenorhabditis elegans Hypothetical
protein T09A5.10 protein.
Length = 821
Score = 28.3 bits (60), Expect = 6.1
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Frame = +2
Query: 323 CMKEDDICELLKFERKMLRARISILKNDKFI------QVRLKMETGLDGKAQKVNYYFIN 484
C +DDI +KF+ + + +++KN+K I Q K+ + A+K N
Sbjct: 529 CKSKDDI---IKFQEEQNKRAANLIKNEKAIRDQASAQFAEKLAILKNSLAEKENETVTL 585
Query: 485 YKTFVNVV-KYKLDLMRKRLETEER 556
+ F +VV K+K +L K L + R
Sbjct: 586 KENFASVVMKHKAELEEKELFLQSR 610
>AF240692-1|AAF61239.1| 821|Caenorhabditis elegans LIN-5 protein.
Length = 821
Score = 28.3 bits (60), Expect = 6.1
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Frame = +2
Query: 323 CMKEDDICELLKFERKMLRARISILKNDKFI------QVRLKMETGLDGKAQKVNYYFIN 484
C +DDI +KF+ + + +++KN+K I Q K+ + A+K N
Sbjct: 529 CKSKDDI---IKFQEEQNKRAANLIKNEKAIRDQASAQFAEKLAILKNSLAEKENETVTL 585
Query: 485 YKTFVNVV-KYKLDLMRKRLETEER 556
+ F +VV K+K +L K L + R
Sbjct: 586 KENFASVVMKHKAELEEKELFLQSR 610
>AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical
protein Y48G8AL.10 protein.
Length = 976
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Frame = +2
Query: 524 LMRKR-LETEERDATSRASFKCPACGKTF----TDLEADQLYDMATQEFQCTFC 670
L RK L+ R FKCP C +F T Q + A ++QCT C
Sbjct: 873 LTRKNDLDRHMRIHAGARDFKCPTCSMSFRVKSTLTTHMQTHSDAPPQYQCTVC 926
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,913,236
Number of Sequences: 27780
Number of extensions: 313617
Number of successful extensions: 1017
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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