Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_O22
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    29   0.061
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    27   0.19 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.7  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   5.3  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   9.2  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 28.7 bits (61), Expect = 0.061
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +2

Query: 533 KRLETEERDATSRASFKCPACGKTF---TDLEADQLYDMATQEFQCTFC 670
           K+L+   R  T    + C  CGK+F     L+  Q+     + ++CT C
Sbjct: 217 KQLKVHTRTHTGEKPYTCDICGKSFGYNHVLKLHQVAHYGEKVYKCTLC 265



 Score = 25.8 bits (54), Expect = 0.43
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = +2

Query: 578 FKCPACGKTF-TDLEADQLYDMATQE--FQCTFCS 673
           ++C  CGKTF       + Y   T E  +QC +CS
Sbjct: 92  YRCNICGKTFAVPARLTRHYRTHTGEKPYQCEYCS 126



 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 554 RDATSRASFKCPACGKTFT 610
           R  T    + C ACGK FT
Sbjct: 196 RTHTGEKPYVCKACGKGFT 214



 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
 Frame = +2

Query: 536 RLETEERDATSRASFKCPACGKTFT---DLEADQLYDMATQEFQCTFC 670
           RL    R  T    ++C  C K+F+   +L   +      + ++C  C
Sbjct: 106 RLTRHYRTHTGEKPYQCEYCSKSFSVKENLSVHRRIHTKERPYKCDVC 153



 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +2

Query: 536 RLETEERDATSRASFKCPACGKTF 607
           +L    R  T     KC  C KTF
Sbjct: 162 KLHRHMRIHTGERPHKCTVCSKTF 185


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
 Frame = +2

Query: 551 ERDATSRASFKCPACGKTFT---DLEADQLYDMATQEFQCTFC 670
           ER  T    F+CP C K FT    L+         + + C+ C
Sbjct: 1   ERTHTGEKPFECPECHKRFTRDHHLKTHMRLHTGEKPYHCSHC 43


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/28 (28%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 51  YFVKFYVPTCM-CYNKWTTTKLEEISIP 131
           Y ++ Y+P CM     W +  L++ ++P
Sbjct: 244 YLIQIYIPCCMLVIVSWVSFWLDQSAVP 271


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/28 (28%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 51  YFVKFYVPTCM-CYNKWTTTKLEEISIP 131
           Y ++ Y+P CM     W +  L++ ++P
Sbjct: 244 YLIQIYIPCCMLVIVSWVSFWLDQSAVP 271


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 340 IVFFHTWIPDQHINNECILYCVEA 269
           +V FH   P +  N+  ++ CV+A
Sbjct: 292 VVIFHFAHPREEFNHWTVMRCVQA 315


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +2

Query: 557 DATSRASFKCPACGKTFTDLEADQLYDMA-TQEFQCTFC 670
           +  ++ SF C  C K +  L A +++    T   +C  C
Sbjct: 10  EGQAKKSFSCKYCEKVYVSLGALKMHIRTHTLPCKCHLC 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,945
Number of Sequences: 438
Number of extensions: 4104
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)