Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_O21
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098 120 8e-28
01_07_0123 + 41206782-41206844,41207701-41207782,41208587-412087... 115 4e-26
08_02_0516 + 18080706-18080760,18081796-18081885,18082479-180825... 29 3.3
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239... 29 3.3
01_01_0467 - 3446243-3446254,3446331-3446420,3446544-3446816,344... 29 3.3
03_05_0323 + 23102151-23102584,23102722-23102867,23102985-23103184 28 7.6
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111... 28 7.6
>03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098
Length = 221
Score = 120 bits (290), Expect = 8e-28
Identities = 64/136 (47%), Positives = 87/136 (63%)
Frame = +3
Query: 255 SKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEA 434
SKQSR EKK+RK M KLG+KPV GV R+TI+++KNILFV++ PDV+K+P S+TY++FGEA
Sbjct: 75 SKQSRSEKKSRKAMMKLGMKPVTGVSRITIKRAKNILFVVSKPDVFKSPTSETYVIFGEA 134
Query: 435 KIEDLSTQATMAAAXRFKAPETTATGNDASTTGTTVAPIAXXXXXXXXXXXXXXXXXXXI 614
KIEDLS+Q AA +F+ + + + A A +
Sbjct: 135 KIEDLSSQLQAQAAQQFRMQDLSKV-----MSKPDAAAAAPADEEEEVDETGIEPRDIDL 189
Query: 615 VMSXANVSRAKAVRAL 662
VM+ A+VSRAKAV+AL
Sbjct: 190 VMTQASVSRAKAVKAL 205
>01_07_0123 +
41206782-41206844,41207701-41207782,41208587-41208717,
41208758-41209147
Length = 221
Score = 115 bits (276), Expect = 4e-26
Identities = 73/163 (44%), Positives = 92/163 (56%), Gaps = 19/163 (11%)
Frame = +3
Query: 231 AGIDIVSKSKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKN----------------- 359
AG D +SKQSR EKK+RK M KLG+K + GV RVTI+KSKN
Sbjct: 50 AGGDASGRSKQSRSEKKSRKAMQKLGMKTITGVSRVTIKKSKNAHRIVIYHCILLNFSLH 109
Query: 360 --ILFVINSPDVYKNPHSDTYIVFGEAKIEDLSTQATMAAAXRFKAPETTATGNDASTTG 533
ILFVI+ PDV+K+P+SDTY++FGEAKIEDLS+Q AA +FKAP D S
Sbjct: 110 YQILFVISKPDVFKSPNSDTYVIFGEAKIEDLSSQLQTQAAEQFKAP-------DLSNVI 162
Query: 534 TTVAPIAXXXXXXXXXXXXXXXXXXXIVMSXANVSRAKAVRAL 662
+ P A +VM+ A VSR++AV+AL
Sbjct: 163 SKAEPSAAAQDDEEVDESGVEPKDIELVMTQATVSRSRAVKAL 205
>08_02_0516 +
18080706-18080760,18081796-18081885,18082479-18082573,
18083658-18083726,18083812-18084393
Length = 296
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 406 QTPTLFLVKPRLKICPHRPPWLQLXDSRHQRPQPLA 513
Q P ++ +L P +PP LQ HQ+PQP A
Sbjct: 244 QQPPQLQLQSQLHPQPQQPPQLQPQPQLHQQPQPQA 279
>02_01_0336 +
2397648-2397812,2398367-2398441,2398860-2398975,
2399155-2399269,2399360-2399488,2399809-2399856,
2400369-2400448,2400628-2400824,2400916-2401202,
2401281-2401307,2401353-2401538,2401633-2402094,
2402201-2402350,2402612-2402687,2402851-2402978,
2403244-2403435,2403559-2403690,2403767-2403889,
2404128-2404346,2404518-2404679
Length = 1022
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 395 LVYIRRVDDKENVL*FSDCHSLYTLYWFETEFTHYLS 285
L I + ++K+N+L S +L + WF EF+H S
Sbjct: 176 LAQIVKAEEKDNMLRASTLQALSAMIWFMGEFSHISS 212
>01_01_0467 -
3446243-3446254,3446331-3446420,3446544-3446816,
3446898-3447066,3447579-3447646,3447890-3448074,
3448683-3448806
Length = 306
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 352 QRTFSLSSTRLMYTRILIQTPTLFLVKPRL 441
Q+ F +SST+L+Y Q TLF+V P L
Sbjct: 134 QKKFKVSSTQLLYQSCPYQALTLFIVGPFL 163
>03_05_0323 + 23102151-23102584,23102722-23102867,23102985-23103184
Length = 259
Score = 27.9 bits (59), Expect = 7.6
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Frame = +3
Query: 204 DAGGITNPIAGIDIVSKSKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSP 383
D G P+ D+ + Q RG+ I+ L LKP E + S + + S
Sbjct: 134 DLGEFVLPLFEEDVDIEDVQQRGQPDIPVIVQALTLKPFVQWEETSQSPSAEVNMAMTSL 193
Query: 384 DVYKN--PHSDTYIVFGEAKIEDLSTQATMAAAXRFKAPE 497
D ++N D I + K+E + TM + +A E
Sbjct: 194 D-FENMLADRDRRIQYWRTKLEVAELKKTMVEVKKDQAVE 232
>03_01_0141 +
1116833-1117082,1117658-1118574,1119417-1119579,
1119668-1120497,1120562-1120570
Length = 722
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3
Query: 483 IXQLQPWWPVWTNLQSWLHQK 421
I QL PW P T SWL +K
Sbjct: 110 IKQLHPWIPSTTGRSSWLEEK 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,775,896
Number of Sequences: 37544
Number of extensions: 275934
Number of successful extensions: 775
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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