Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_O21
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024847-2|AAO21415.1|  197|Caenorhabditis elegans Hypothetical ...   118   5e-27
AC024847-3|AAF60854.1|  195|Caenorhabditis elegans Hypothetical ...   117   9e-27
U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of ce...    33   0.24 
AF016436-2|AAC25898.1|  406|Caenorhabditis elegans Hypothetical ...    29   2.2  
AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protei...    28   5.1  
AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A prot...    28   5.1  
Z71186-4|CAA94916.1|  867|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z50109-1|CAA90433.3|  142|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>AC024847-2|AAO21415.1|  197|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.5b protein.
          Length = 197

 Score =  118 bits (283), Expect = 5e-27
 Identities = 72/143 (50%), Positives = 84/143 (58%)
 Frame = +3

Query: 234 GIDIVSKSKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDT 413
           G  I  ++KQSR EKKARK+ SKLGLK V GV RV IRKSKNILFVIN PDV+K+P SDT
Sbjct: 46  GDHIDKQAKQSRSEKKARKLFSKLGLKQVTGVSRVCIRKSKNILFVINKPDVFKSPGSDT 105

Query: 414 YIVFGEAKIEDLSTQATMAAAXRFKAPETTATGNDASTTGTTVAPIAXXXXXXXXXXXXX 593
           YI+FGEAKIEDL+  A M+A    K P   A          TV                 
Sbjct: 106 YIIFGEAKIEDLTQHAQMSAIENLK-PTREA------PQLKTVEEDENEDVEFKEDSTGI 158

Query: 594 XXXXXXIVMSXANVSRAKAVRAL 662
                 +V+S AN +R KA+RAL
Sbjct: 159 EEKDIELVISQANTTRNKAIRAL 181


>AC024847-3|AAF60854.1|  195|Caenorhabditis elegans Hypothetical
           protein Y65B4BR.5a protein.
          Length = 195

 Score =  117 bits (281), Expect = 9e-27
 Identities = 58/85 (68%), Positives = 66/85 (77%)
 Frame = +3

Query: 234 GIDIVSKSKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDT 413
           G  I  ++KQSR EKKARK+ SKLGLK V GV RV IRKSKNILFVIN PDV+K+P SDT
Sbjct: 46  GDHIDKQAKQSRSEKKARKLFSKLGLKQVTGVSRVCIRKSKNILFVINKPDVFKSPGSDT 105

Query: 414 YIVFGEAKIEDLSTQATMAAAXRFK 488
           YI+FGEAKIEDL+  A M+A    K
Sbjct: 106 YIIFGEAKIEDLTQHAQMSAIENLK 130


>U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of cell
           death protein 1 protein.
          Length = 161

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 19/75 (25%), Positives = 36/75 (48%)
 Frame = +3

Query: 210 GGITNPIAGIDIVSKSKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDV 389
           GG   P     ++ K+  +  +KK +  + KL +  + G+E V + K    +   N+P V
Sbjct: 23  GGKGTPRRKKKVIHKTAAA-DDKKLQSNLKKLSVTNIPGIEEVNMIKDDGTVIHFNNPKV 81

Query: 390 YKNPHSDTYIVFGEA 434
             +  ++T+ V G A
Sbjct: 82  QTSVPANTFSVTGSA 96


>AF016436-2|AAC25898.1|  406|Caenorhabditis elegans Hypothetical
           protein F38H12.3 protein.
          Length = 406

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 551 YWCYRRSSCGSVIASGCGLWCLESXSCSHGGL 456
           Y C+++ +C    AS C   C     CSH G+
Sbjct: 67  YKCWKKGNCVITFASRCVCRCCRLRKCSHVGM 98


>AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protein 1
           protein.
          Length = 1908

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -1

Query: 551 YWCYRRSSCGSVIASGCGL-WCLESXSCSHGGL 456
           Y C R +SC +  AS     WCLES  C  G L
Sbjct: 649 YDCNRYTSCSTCSASQFPCDWCLESNECVAGKL 681


>AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A
           protein.
          Length = 1951

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -1

Query: 551 YWCYRRSSCGSVIASGCGL-WCLESXSCSHGGL 456
           Y C R +SC +  AS     WCLES  C  G L
Sbjct: 655 YDCNRYTSCSTCSASQFPCDWCLESNECVAGKL 687


>Z71186-4|CAA94916.1|  867|Caenorhabditis elegans Hypothetical
           protein F23D12.5 protein.
          Length = 867

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +3

Query: 291 IMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAK 437
           I S    K +  VER +I+K + +LF + + D  +NP     IV G+ K
Sbjct: 796 IRSAKNEKSIIPVERCSIQKCREVLFNMITLDNKQNPFCLNCIVKGKVK 844


>Z50109-1|CAA90433.3|  142|Caenorhabditis elegans Hypothetical
           protein C09H10.1 protein.
          Length = 142

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 441 EDLSTQATMAAAXRFKAPETTATGNDASTT 530
           ED ++Q T AAA   +AP  + +GN    T
Sbjct: 36  EDATSQVTAAAANPAQAPSASISGNSVQNT 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,545,963
Number of Sequences: 27780
Number of extensions: 239839
Number of successful extensions: 770
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)