Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_O18
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    27   1.7  
SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces...    25   6.7  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    24   8.9  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    24   8.9  

>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 4   SLSQKCPNSRFSSLFWLAS*WPKPNSLSHPAGVEXGLP 117
           +L +KCP + F    W    W  PN LS   GVE  +P
Sbjct: 764 NLGKKCPENAFQG--WT---WQFPNDLSIMNGVEDYIP 796


>SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 252

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3

Query: 41  EEKREFGHFWLRE 3
           EE   FGH WLRE
Sbjct: 129 EENEAFGHEWLRE 141


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 31  RFSSLFWLAS*WPKPNSLSHPAGVE 105
           RF+++FW     P  NS++H + +E
Sbjct: 240 RFNTMFWKPEFLPLDNSVAHMSLIE 264


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
 Frame = +1

Query: 73  PNSLSHPAGVEXGL----PSPALCPAGTMKPWRLFINLFRMKLKNSCYAR 210
           P+S   P G   G     P P LC  G   P    +  F +  K S +AR
Sbjct: 275 PHSCGDPCGKTRGQDCEHPCPLLCHPGPCPPCTATVEKFCLCGKESIHAR 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,530,660
Number of Sequences: 5004
Number of extensions: 30052
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)