Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_O15
(796 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0376 + 22896481-22896972 31 1.1
09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908... 31 1.1
02_01_0311 - 2075881-2076165,2076450-2076519,2076628-2076691,207... 29 3.2
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376... 29 4.3
12_02_0451 - 19179592-19179648,19179745-19179879,19180214-191802... 28 7.4
07_03_0713 - 20882442-20883068,20883950-20883955 28 7.4
09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638... 28 9.8
03_06_0654 - 35307122-35307205,35307381-35307444,35307486-353075... 28 9.8
>11_06_0376 + 22896481-22896972
Length = 163
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 578 SKQISIPKEHYRWILGKQGQKLKELEKVTATK 673
SKQ+ +P+EH WIL ++ E +K A +
Sbjct: 8 SKQLRMPQEHISWILHRREPSFDEADKAAARR 39
>09_04_0618 +
18988614-18989102,18989913-18990314,18990555-18990806,
18991564-18991941,18992350-18992426,18992700-18992808,
18993424-18993574,18993810-18993903,18997072-18997474,
18997590-18997742,18998115-18998474
Length = 955
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +2
Query: 521 QSAVLEARRQILTHFQQQASK---QISIPKEHYRWILGKQGQKLKELEKVTATKINVPG 688
Q AVL +I ++S ++ +P +H +LGK G + E+ K+T I + G
Sbjct: 307 QDAVLRVHSRISESSMDKSSAVTARLLVPSQHIGCLLGKGGSIIAEMRKITGAGIRIFG 365
>02_01_0311 -
2075881-2076165,2076450-2076519,2076628-2076691,
2076798-2076837,2076930-2077006,2077095-2077311,
2077482-2078132
Length = 467
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = -2
Query: 468 MCAPVSLVMEWQVLKDSPSPKVLALSSFRSSYGT 367
M PVS + + L+D+ SP + LSS RSS GT
Sbjct: 227 MSLPVSSCSDQEDLQDARSPAKVQLSSSRSSSGT 260
>06_01_0520 +
3761990-3762327,3763304-3763589,3763746-3763820,
3764013-3764961,3766967-3767064,3768144-3768284,
3768758-3768874,3768924-3769013,3769014-3771818
Length = 1632
Score = 29.1 bits (62), Expect = 4.3
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Frame = +2
Query: 140 MMHQQSMMVGDVIPVHPDVPMHV--EEMNNVGYENNVSFAYDDLFPALPHSQPLVQRNIQ 313
+ HQQ M + P+HP + +H+ E NV V + LF + QP +N+Q
Sbjct: 664 LSHQQIMDLNKTWPLHPILLIHLASELPKNVSLMQVVRLLH--LFSSRNRLQPRQNQNLQ 721
Query: 314 QATNKLRVGSSLHTQVFHVPYEERKLDNANTFGEGES-LRTCHSIT 448
K SSL Q + + N+++ G +S +TC S T
Sbjct: 722 DELPKESEMSSLVNQT-----DIQSSSNSSSHGSFKSPCQTCSSST 762
>12_02_0451 -
19179592-19179648,19179745-19179879,19180214-19180247,
19180347-19180423,19180523-19180598,19180792-19180925,
19181772-19181878,19182505-19182808,19182913-19183218
Length = 409
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = +2
Query: 401 NTFGEGESLRTCHSITKDTGAHIEISTSKDGSLTFLITGKQSAVLEARRQILTHFQQQAS 580
NT+ + E L+ + D G H+ + T+K TFL ++A L H+ S
Sbjct: 303 NTYTKAEVLKMEGLVLNDMGFHLSVPTTK----TFLRRFLRAAQASRNNHTLEHYTSYKS 358
Query: 581 KQISI 595
I I
Sbjct: 359 SDIQI 363
>07_03_0713 - 20882442-20883068,20883950-20883955
Length = 210
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 266 FPALPHSQPLVQRNIQQATNKLRVGSSLHTQVFH 367
FP++P Q RN+QQ +K S+L T FH
Sbjct: 5 FPSVPAKQRRRPRNLQQVKDK-ATASALETAAFH 37
>09_04_0365 -
16962608-16963174,16963301-16963486,16963824-16963896,
16964307-16964497,16964982-16965198,16965394-16965797,
16966593-16966658,16966668-16966721,16966945-16967079,
16967194-16967391,16967734-16967918,16968990-16969527
Length = 937
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 432 VLKDSPSPKVLALSSFRSSYGTWK 361
+ KD P P V SSF + +G W+
Sbjct: 645 IQKDVPYPAVFVTSSFNTRFGVWE 668
>03_06_0654 -
35307122-35307205,35307381-35307444,35307486-35307536,
35307881-35307993,35308083-35308164,35308621-35308741,
35308821-35308980,35309335-35309396,35309548-35309707,
35309794-35310021
Length = 374
Score = 27.9 bits (59), Expect = 9.8
Identities = 22/55 (40%), Positives = 27/55 (49%)
Frame = +2
Query: 299 QRNIQQATNKLRVGSSLHTQVFHVPYEERKLDNANTFGEGESLRTCHSITKDTGA 463
+R IQ T L VGSS+ +V V EERKL F E ++ HS GA
Sbjct: 132 KRPIQDVTKDL-VGSSISVKVVEVNEEERKL----VFSEKDASWFTHSSLVKIGA 181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,173,644
Number of Sequences: 37544
Number of extensions: 416881
Number of successful extensions: 1086
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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