Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_O14
         (371 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   2.9  
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    24   6.7  
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   8.8  

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 32   WFVWAINIWKSPP 70
            W VWA  +W +PP
Sbjct: 1129 WEVWAPRVWSNPP 1141


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 149 TNTFQSVKYRSVTKAAPPNPPAED 78
           TN+   +K  S TK+ P NP +E+
Sbjct: 60  TNSDNKIKKLSKTKSNPTNPKSEE 83


>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 101 PPNPPAEDRNAVAIS 57
           PPNPPA + NA  ++
Sbjct: 277 PPNPPAANGNATPVT 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,147,152
Number of Sequences: 5004
Number of extensions: 18880
Number of successful extensions: 36
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)