Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_O13
         (362 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    28   0.51 
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    25   2.7  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    25   4.8  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    25   4.8  
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    24   6.3  
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    24   8.3  

>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 27.9 bits (59), Expect = 0.51
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = -2

Query: 295 PYSLFYYKTVASRYPPAQSSASSNKKLAFFSI-ISSLHFLHAATLLQPLVEYSAXQELHW 119
           P SLF      +  P ++SS+  +KK +  S  + S   L   T   PL+   + +  HW
Sbjct: 42  PVSLFCSSPYPNLPPHSRSSSLESKKPSVASQDVKSDGTLPIGTNNNPLIPSHSQESSHW 101

Query: 118 SMKFTKVTSAM 86
           +++   + SA+
Sbjct: 102 TIRHESMPSAL 112


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 264 HHGILQPSHQHHQTKNLHSSP 202
           H G+L P HQH    ++ +SP
Sbjct: 16  HPGLLTPDHQHAAILSVQNSP 36


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 18  GMVRSSIGXLWIFXSFLPPXILSXAEVTLVN 110
           G+++     L +F +F+PP       VTL+N
Sbjct: 268 GILKILKDDLLVFYTFIPPRFTIQTSVTLIN 298


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 250 PAQSSASSNKKLAFFSIISSLHFLHAATLLQPLVEYSAXQELHW 119
           P + S+++  K++  SI    H LHA TL    VEY+  + L W
Sbjct: 224 PFKYSSTTRHKVSTESIF---HVLHAFTLFDTTVEYN-IEPLLW 263


>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -2

Query: 295 PYSLFYYKTVASRYPPAQSSASSNKKLAFFSIISSLHFLHAATLLQPLV 149
           PY +  Y  V  R PPA +  S   K     +   + ++ +A +L+ LV
Sbjct: 25  PYEIKVYDRVDGRAPPAYTKLSPLGKSPIV-VDDGVTYIESAAILEHLV 72


>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 93  EVTLVNFMDQCSS*XAEYSTNGCNRVAAC 179
           EV   N MD+C +  +E    GC+ +  C
Sbjct: 259 EVICENLMDRCIASNSESCGIGCDNMTIC 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,106,547
Number of Sequences: 5004
Number of extensions: 17625
Number of successful extensions: 53
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)