Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_O13
         (362 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.28 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   1.5  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   3.4  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   3.4  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   3.4  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   3.4  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   3.4  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   3.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   3.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   3.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   7.8  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.0 bits (52), Expect = 0.28
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = -3

Query: 294 HIHCFITKL*HHGILQPSHQHHQTKNLHSSPLSAVFI 184
           H H   T   HH      H  H T   HSS  +A+ I
Sbjct: 423 HSHIHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQI 459


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -2

Query: 184 FLHAATLLQPLVEYSAXQELHWSMKFTKVTSAM 86
           FLH  T    LV  S    + + M+FT   + M
Sbjct: 130 FLHDVTERNKLVRLSGDGSVTYGMRFTTTLACM 162


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 234 HHQTKNLHSSPLSAVFIFCMQLPC 163
           HH+T + +  P     +F   LPC
Sbjct: 282 HHRTPDRYVMPSWIKMLFLQWLPC 305


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 234 HHQTKNLHSSPLSAVFIFCMQLPC 163
           HH+T + +  P     +F   LPC
Sbjct: 282 HHRTPDRYVMPSWIKMLFLQWLPC 305


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 234 HHQTKNLHSSPLSAVFIFCMQLPC 163
           HH+T + +  P     +F   LPC
Sbjct: 282 HHRTPDRYVMPSWIKMLFLQWLPC 305


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 234 HHQTKNLHSSPLSAVFIFCMQLPC 163
           HH+T + +  P     +F   LPC
Sbjct: 282 HHRTPDRYVMPSWIKMLFLQWLPC 305


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 234 HHQTKNLHSSPLSAVFIFCMQLPC 163
           HH+T + +  P     +F   LPC
Sbjct: 282 HHRTPDRYVMPSWIKMLFLQWLPC 305


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 234 HHQTKNLHSSPLSAVFIFCMQLPC 163
           HH+T + +  P     +F   LPC
Sbjct: 282 HHRTPDRYVMPSWIKMLFLQWLPC 305


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 234 HHQTKNLHSSPLSAVFIFCMQLPC 163
           HH+T + +  P     +F   LPC
Sbjct: 350 HHRTPDRYVMPSWIKMLFLQWLPC 373


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 234 HHQTKNLHSSPLSAVFIFCMQLPC 163
           HH+T + +  P     +F   LPC
Sbjct: 350 HHRTPDRYVMPSWIKMLFLQWLPC 373


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 240 HQHHQTKNL 214
           H HHQT++L
Sbjct: 353 HHHHQTQSL 361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,814
Number of Sequences: 438
Number of extensions: 1240
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)