Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_O12
(734 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 62 8e-11
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 57 3e-09
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 54 2e-08
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 54 3e-08
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 49 8e-07
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo... 45 1e-05
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 44 2e-05
SPAC823.10c |||mitochondrial carrier with solute carrier repeats... 40 3e-04
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c... 40 5e-04
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 38 0.001
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 37 0.003
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 36 0.008
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 35 0.010
SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyc... 35 0.014
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 35 0.014
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 29 0.52
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo... 27 2.1
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 27 2.1
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 27 3.7
SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyce... 26 4.8
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 26 4.8
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 62.1 bits (144), Expect = 8e-11
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Frame = +2
Query: 254 DFTAGSLGGVAVVYVGQPLDTVKVKMQTFPH---LYKGMYDCLKQTLRNDGVIRGLYAGT 424
DF AG GGVA V VGQP D VKV++Q+ + +Y DC+K+ +N+G + Y GT
Sbjct: 20 DFLAGVSGGVAQVLVGQPFDCVKVRLQSQSNVSPIYNNALDCVKKISKNEG-LAAFYKGT 78
Query: 425 TPAIMANVAENSVLFAAYGYCQKFVCR 505
++ S+ F + YC++F R
Sbjct: 79 VLPLLGIGFCVSIQFTTFEYCKRFFSR 105
Score = 39.5 bits (88), Expect = 5e-04
Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Frame = +2
Query: 218 TDSSNNLRSGIIDFTAGSLGGVAVVYVGQPLDTVKVKMQTFPHL----YKGMYDCLKQTL 385
TD S + F AG+ G A+ P D VK K+QT L YK + C K
Sbjct: 205 TDRSQTPGWKLCVFGAGA--GYAMWLAAYPFDIVKSKIQTDGFLSKATYKNSWQCAKGIY 262
Query: 386 RNDGVIRGLYAGTTPAIMANVAENSVLFAAY 478
G +RG Y G P ++ N+V F Y
Sbjct: 263 TKAG-LRGFYRGFVPVLVRAAPANAVTFYVY 292
>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 56.8 bits (131), Expect = 3e-09
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = +2
Query: 263 AGSLGGVAVVYVGQPLDTVKVKMQT--FPHLYKGMYDCLKQTLRNDGVIRGLYAGTTPAI 436
AG +GG ++ LDTVK + Q + + Y GM C L +GV GLY+G P +
Sbjct: 21 AGGIGGATADFLMHSLDTVKTRQQAALYTNKYNGMVKCYSTILCEEGVFHGLYSGVCPML 80
Query: 437 MANVAENSVLFAAYGYCQK 493
+ ++ ++ F++Y Y ++
Sbjct: 81 IGSLPATALFFSSYEYTKR 99
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 254 DFTAGSLGGVAVVYVGQPLDTVKVKMQT 337
+ GSL G ++ PLD K ++QT
Sbjct: 217 ELITGSLAGAGAGFLTTPLDVAKTRLQT 244
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 54.4 bits (125), Expect = 2e-08
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Frame = +2
Query: 242 SGIIDFTAGSLGGVAVVYVGQPLDTVKVKMQTF--PHLYKGMYDCLKQTLRNDGVIRGLY 415
S + F GS+ G+ VY QP+DTVK +MQ+ YK C + L DG++R +
Sbjct: 202 STVTTFLVGSVAGIITVYCTQPIDTVKSRMQSLSASKEYKNSIHCAYKILTQDGLLR-FW 260
Query: 416 AGTTPAIMANVAENSVLFAAY 478
+G TP + + ++F Y
Sbjct: 261 SGATPRLARLILSGGIVFTVY 281
Score = 30.7 bits (66), Expect = 0.23
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Frame = +2
Query: 191 SFDTEMADSTDSSNNLRSGIIDFTAGSLGGVAV-VYVGQPLDTVKV-----KMQTFPHLY 352
+FD+ +D +L +G AG GVA V V P +++K + + P L
Sbjct: 86 AFDSIKKSLSDEHGHL-TGPRTVLAGLGAGVAESVLVLTPFESIKTAIIDDRKRPNPRL- 143
Query: 353 KGMYDCLKQTLRNDGVIRGLYAGTTPAIMANVAENSVLFAAY 478
KG + + +G IRGLY G + A + V F AY
Sbjct: 144 KGFLQASRIIVHENG-IRGLYRGLAATVARQAANSGVRFTAY 184
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 53.6 bits (123), Expect = 3e-08
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +2
Query: 251 IDFTAGSLGGVAVVYVGQPLDTVKVKMQ--TFPHLYKGMYDCLKQTLRNDGVIRGLYAGT 424
+ F AG++ G++ V PLD VK +MQ Y G +DCLK+ ++N+G R LY G
Sbjct: 10 VTFAAGAVAGISEVLTLYPLDVVKTRMQLSVGKSDYNGTFDCLKKIVKNEGPHR-LYRGI 68
Query: 425 TPAIMANVAENSVLFAA 475
P I+ + ++ FA+
Sbjct: 69 LPPILMEAPKRALKFAS 85
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Frame = +2
Query: 263 AGSLGGVAVVYVGQPLDTVKVKMQTFPHL------YKGMYDCLKQTLRNDGVIRGLYAGT 424
AG++GG+ ++ P D +K ++QT P + Y Y L R +G LY G
Sbjct: 205 AGTIGGIFGTFLSTPFDVIKSRIQTVPRIAGQVPKYNWAYPALVTVAREEG-FTALYKGF 263
Query: 425 TPAIMANVAENSVLFAAYGYCQKFVCR 505
P ++ +L + +F R
Sbjct: 264 VPKVLRLGPGGGILLVVFNSVIEFYKR 290
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 48.8 bits (111), Expect = 8e-07
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Frame = +2
Query: 212 DSTDSSN-NLRSGIIDFTAGSLGGVAVVYVGQPLDTVKVKMQT-----FPHLYKGMYDCL 373
D+ D + L +G++ G+L G + PL+ ++ ++QT P Y G DC
Sbjct: 324 DNVDPQDVKLPNGLV-MAFGALSGSTGATIVFPLNVIRTRLQTQGTSAHPATYDGFIDCF 382
Query: 374 KQTLRNDGVIRGLYAGTTPAIMANVAENSVLFAAYGYCQKFV 499
+T +N+G RGLY G +P ++ ++ + Y C+K++
Sbjct: 383 YKTTKNEG-FRGLYKGLSPNLLKVAPSVAISYLVYENCKKWL 423
>SPBC29A3.11c |||mitochondrial carboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 45.2 bits (102), Expect = 1e-05
Identities = 22/74 (29%), Positives = 40/74 (54%)
Frame = +2
Query: 257 FTAGSLGGVAVVYVGQPLDTVKVKMQTFPHLYKGMYDCLKQTLRNDGVIRGLYAGTTPAI 436
F+A + +G PLD++KV+ QT+ + + C + ++N+G ++GLY G T +
Sbjct: 21 FSAALVSSAISNVIGYPLDSIKVRQQTYN--FPTIRSCFQNAVKNEG-LKGLYRGLTLPL 77
Query: 437 MANVAENSVLFAAY 478
++ SV F Y
Sbjct: 78 ISATLSRSVSFTVY 91
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/59 (37%), Positives = 32/59 (54%)
Frame = +2
Query: 263 AGSLGGVAVVYVGQPLDTVKVKMQTFPHLYKGMYDCLKQTLRNDGVIRGLYAGTTPAIM 439
+G + G + P+DTV +QTFP YK DC RN G I+GLY G + +++
Sbjct: 198 SGVIAGAGSKAIMFPVDTVVKTLQTFPSNYKSFKDCFLSIYRNSG-IKGLYRGLSVSML 255
Score = 32.7 bits (71), Expect = 0.056
Identities = 21/98 (21%), Positives = 43/98 (43%)
Frame = +2
Query: 263 AGSLGGVAVVYVGQPLDTVKVKMQTFPHLYKGMYDCLKQTLRNDGVIRGLYAGTTPAIMA 442
AG + V ++ P D +K++MQ + ++ K+T++ +GV R L+ G A +
Sbjct: 22 AGGISSVICRFMIAPFDVIKIRMQITQSSLRPVF---KETVQKEGV-RALWRGNVVAELL 77
Query: 443 NVAENSVLFAAYGYCQKFVCRITGVEHVLECRAALSGG 556
+ + F A+ + + +H + S G
Sbjct: 78 YLVYGAAEFVAFSKLKHLTENLAMNDHAVNFLCGTSAG 115
>SPAC823.10c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 40.3 bits (90), Expect = 3e-04
Identities = 21/95 (22%), Positives = 39/95 (41%)
Frame = +2
Query: 194 FDTEMADSTDSSNNLRSGIIDFTAGSLGGVAVVYVGQPLDTVKVKMQTFPHLYKGMYDCL 373
FD S+ I++ +G + G + P D +K ++Q PH+YK
Sbjct: 193 FDRFSPSSSVQGTVPHRNIVNVMSGLISGATATAITNPFDMLKTRVQLEPHIYKNFLHSA 252
Query: 374 KQTLRNDGVIRGLYAGTTPAIMANVAENSVLFAAY 478
K N+G RG G ++ +++ ++ Y
Sbjct: 253 KLVYANEG-FRGFLDGFFLRVLRKSISSTITWSVY 286
Score = 33.9 bits (74), Expect = 0.024
Identities = 20/78 (25%), Positives = 38/78 (48%)
Frame = +2
Query: 263 AGSLGGVAVVYVGQPLDTVKVKMQTFPHLYKGMYDCLKQTLRNDGVIRGLYAGTTPAIMA 442
AG+LGG QPLD +K + Q + +++ + ++G + L+ GT P+I+
Sbjct: 20 AGALGGFISSTTLQPLDLLKTRCQQSQR--DSLPKMVRRIILHEGGVFSLWKGTLPSILR 77
Query: 443 NVAENSVLFAAYGYCQKF 496
+ +S F + + F
Sbjct: 78 STTGSSCYFYFLNWLRHF 95
>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 39.5 bits (88), Expect = 5e-04
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Frame = +2
Query: 251 IDFTAGSLGGVAVVYVGQPLDTVKVKMQT----FP----HLYKGMYDCLKQTLRNDGVIR 406
I+ +G+ G+ G P VK +MQ+ FP + YK +++ + ++ +GV +
Sbjct: 130 INVASGAGSGLCGALFGSPFFLVKTRMQSYSPKFPVGQQYGYKHIFNAFSRIIKENGV-K 188
Query: 407 GLYAGTTPAIMANVAENSVLFAAYGYCQKFV 499
GL+ G AI+ V+ +SV Y + ++ +
Sbjct: 189 GLFVGADAAILRTVSGSSVQLPIYNWAKRMI 219
Score = 39.1 bits (87), Expect = 6e-04
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Frame = +2
Query: 230 NNLRSGIID-FTAGSLGGVAVVYVGQPLDTVKVKM--QTFPHLYKGMYDCLKQTLRNDGV 400
N L G+I TA ++ G V Q DTV +M Q LYK DC+ +T+R++G
Sbjct: 223 NLLEEGMIKHLTASAVSGFGVCCTMQIFDTVMTRMYNQKNKELYKNPIDCILKTIRSEGF 282
Query: 401 IRGLYAGTTPAIMANVAENSV 463
LY G A +A +A +++
Sbjct: 283 F-ALYKG-FGAHLARIAPHTI 301
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/81 (25%), Positives = 36/81 (44%)
Frame = +2
Query: 305 PLDTVKVKMQTFPHLYKGMYDCLKQTLRNDGVIRGLYAGTTPAIMANVAENSVLFAAYGY 484
PLD +K + Q P++Y G K L +G +RGLY G P ++ + + Y
Sbjct: 43 PLDLIKCRKQVNPNIYPGNIAGFKTILSKEG-LRGLYTGGMPTLIGYSLQGCGKYGFYEL 101
Query: 485 CQKFVCRITGVEHVLECRAAL 547
+ + G + E R ++
Sbjct: 102 FKHKYSTLVGAQKAHEYRTSI 122
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 37.1 bits (82), Expect = 0.003
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Frame = +2
Query: 248 IIDFTAGSLGGVAVVY-----VGQPLDTVKVKMQTFPHL-----YKGMYDCLKQTLRNDG 397
++D+ G LGG + + P + V+ +++ P + Y G+ C K G
Sbjct: 269 VLDW-GGKLGGAGIAKFMAAGIAYPHEVVRTRLRQSPSINGTPKYTGLIQCFKLVWMEQG 327
Query: 398 VIRGLYAGTTPAIMANVAENSVLFAAYGYCQKFV 499
++ GLY G T ++ V +LF +Y F+
Sbjct: 328 IV-GLYGGLTAHLLRVVPNACILFGSYEVIMHFI 360
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 35.5 bits (78), Expect = 0.008
Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 7/104 (6%)
Frame = +2
Query: 263 AGSLGGVAVVYVGQPLDTVKVKMQTFPHLYK-------GMYDCLKQTLRNDGVIRGLYAG 421
AG G V PLD VK+ QT Y+ G+Y +K G + GLY G
Sbjct: 23 AGGTAGCVAKSVVAPLDRVKILYQTNHASYRGYAYSRHGLYKAIKHIYHVYG-LHGLYQG 81
Query: 422 TTPAIMANVAENSVLFAAYGYCQKFVCRITGVEHVLECRAALSG 553
T + + F AY ++ + R EH R LSG
Sbjct: 82 HTATLYRVFPYAGIKFVAYEQVRRVLIR--DPEHETHARRFLSG 123
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 35.1 bits (77), Expect = 0.010
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Frame = +2
Query: 263 AGSLGGVAVVYVGQ----PLDTVKVKMQTFPHLYKGMYDCLKQTLRNDGVIRGLYAGTTP 430
A +L G + + P D +K +MQ YK C RN+G + Y
Sbjct: 115 ASALAGACAITISDAFMTPFDVIKQRMQLPSRKYKSALHCATTVFRNEG-LGAFYISYPT 173
Query: 431 AIMANVAENSVLFAAYGYCQKFV 499
I ++ ++ A Y C F+
Sbjct: 174 CIAMSIPFTAIQVATYDTCMSFL 196
Score = 30.7 bits (66), Expect = 0.23
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Frame = +2
Query: 263 AGSLGGVAVVYVGQPLDTVKVKMQT-----FPHL--YKGMYDCLKQTLRNDGVIRGLYAG 421
+G L G + PLD VK +QT P + KG D ++ + N G I + G
Sbjct: 210 SGGLSGAIASSLTTPLDVVKTLLQTRGSSSIPEVRKCKGSLDVVR-FIYNYGGIPSFFKG 268
Query: 422 TTPAIMANVAENSVLFAAYGYCQKFVCRIT 511
P ++ + +V +AAY ++ + R++
Sbjct: 269 IRPRMVVAMPATAVSWAAYEAGKEILIRVS 298
>SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 300
Score = 34.7 bits (76), Expect = 0.014
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +2
Query: 248 IIDFTAGSLGGVAVVYVGQPLDTVKVKMQTFPHLYKG 358
I+ TAGS+ G+ +++ PLD +K+K QT P +KG
Sbjct: 122 IMHATAGSIVGIGEIFL-LPLDVLKIKRQTNPAAFKG 157
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 34.7 bits (76), Expect = 0.014
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2
Query: 350 YKGMYDCLKQTLRNDGVIRGLYAGTTPAIMANVAENSVLFAAY 478
+ G+ D ++T R+DG +RGLY G P+++ V + F Y
Sbjct: 175 FNGLVDVYRKTYRSDG-LRGLYRGFGPSVVGIVVYRGLYFGMY 216
Score = 33.9 bits (74), Expect = 0.024
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Frame = +2
Query: 254 DFTAGSLGGVAVVYVGQPLDTVKVKMQT---------FPHLYKGMYDCLKQTLRNDGVIR 406
DF G + P++ VK+ +Q H YKG+ +C K+T +GVI
Sbjct: 30 DFMMGGVSAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVI- 88
Query: 407 GLYAGTTPAIMANVAENSVLFA 472
L+ G T ++ ++ FA
Sbjct: 89 SLWRGNTANVLRYFPTQALNFA 110
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 29.5 bits (63), Expect = 0.52
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 403 KRFICWHHTSYYG-KCSRKLCAFCSLWILPKVCLSNYR 513
K +C + + K S KLC CSL + P VC S+ +
Sbjct: 741 KEMVCLRDVNDWNIKLSEKLCEICSLEVGPIVCYSSLK 778
>SPAC12B10.09 |||S-adenosylmethionine transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 345
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/79 (20%), Positives = 33/79 (41%)
Frame = +2
Query: 263 AGSLGGVAVVYVGQPLDTVKVKMQTFPHLYKGMYDCLKQTLRNDGVIRGLYAGTTPAIMA 442
+GS+ G + P D VK ++ T ++ +K + ++G + LY G P ++
Sbjct: 264 SGSIAGGIAAALTTPFDVVKTRIMTSQQRLSYVF-TIKSIVAHEGFL-ALYKGIVPRVLW 321
Query: 443 NVAENSVLFAAYGYCQKFV 499
++ Y F+
Sbjct: 322 LSGGGAIFLGCYDVILNFM 340
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 469 CSLWILPKVCLSNYRSRTCFRV*SSSQRWVMHQQVSWLHSSPRSHY 606
C+L+ILP+ C Y + C ++ + ++ Q HS SH+
Sbjct: 403 CTLFILPETCNHAYNTMLC-KLTEDTSSFLKRQTEMLSHSPASSHW 447
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -3
Query: 534 HSKTCSTPVIRQTNFWQYP*AAKSTEFSATFAIIAGVVPAYKPLITPSFLNV 379
+S T +P T+F Y +A +T S + I V+P +P++ PS+ +
Sbjct: 620 NSSTLLSPT--STSFTSYTVSATATPTSTSHIPIPTVLPPTQPVLEPSYREI 669
>SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 192
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 420 PAYKPLITPSFLNVCFKQSYIPLYKCGKVCIFTLTV 313
P Y +I +F+N C +Q I L++ C++ T+
Sbjct: 63 PPYHVIIDTNFINFCLQQK-IDLFEGLMTCLYAKTI 97
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 514 SCNSTDKLLAISIGCKKHRVFC 449
S +S KLL + CKKH++ C
Sbjct: 106 SRHSNQKLLDFCVECKKHKIKC 127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,949,428
Number of Sequences: 5004
Number of extensions: 59456
Number of successful extensions: 188
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -