Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_O12
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   2.3  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   2.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   9.1  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   9.1  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
 Frame = +2

Query: 254 DFTAGSLGGVAVVYVGQPLDTVKVKMQTFPHL---------YKGMYDCLKQTLRNDGVI 403
           DF AG +          P++ VK+ +Q   H+         YKGM DC  +  +  G +
Sbjct: 13  DFLAGGVAAAISKTTVAPIERVKLLLQV-QHISKQISEEQRYKGMIDCFVRIPKEQGFL 70


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
 Frame = +2

Query: 254 DFTAGSLGGVAVVYVGQPLDTVKVKMQTFPHL---------YKGMYDCLKQTLRNDGVI 403
           DF AG +          P++ VK+ +Q   H+         YKGM DC  +  +  G +
Sbjct: 13  DFLAGGVAAAISKTTVAPIERVKLLLQV-QHISKQISEEQRYKGMIDCFVRIPKEQGFL 70


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 643 CVKSTFRVHKLLYDDHYGL 699
           CV S +   K  +DDHYG+
Sbjct: 192 CVGSAYTPLKEDHDDHYGV 210


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 567 LMHYPPLRAALHSKTCSTPVIRQTN 493
           LMH   L  +  + TCS  V +Q N
Sbjct: 504 LMHKDSLGLSTATSTCSLAVAKQQN 528


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = +3

Query: 414 MLAPHQLLWQM*QKTLCFLQPMDIAKSLSVELQ 512
           M  P+  LW    KTL ++  + +  S +++ +
Sbjct: 105 MSIPNHYLWLYHDKTLLYMSKLTLVLSCAMKFE 137


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 374 LNSHTFLYINVERFAFS 324
           L+SH   Y+N E+F  S
Sbjct: 268 LSSHNLNYVNTEQFVKS 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,744
Number of Sequences: 438
Number of extensions: 4084
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)