Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_O11
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    28   0.97 
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    26   3.9  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    26   5.2  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    26   5.2  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    25   6.9  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    25   9.1  
SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase Mpg1|Sc...    25   9.1  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    25   9.1  

>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +1

Query: 61   LLKSQVXLCPXSRAMXGLFAIPFTVLEIPNIKIKQPTWLQAPSAMTTFSLVLLSYFLVTG 240
            L+ +QV  C     M    ++P +    PN+    P+    P A   F + L+  F+  G
Sbjct: 2282 LMLAQVISC--ITIMIAKPSLPVSDRVFPNLGAWNPSEGPGPCASPCFYIALICQFVAVG 2339

Query: 241  GIIY 252
            G++Y
Sbjct: 2340 GLLY 2343


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 439 PKLNRILLISVAFLCILVSFFTTWI 513
           P +  +L + ++ L ++V FFT W+
Sbjct: 81  PNIYSLLRLLISVLAVIVVFFTAWV 105


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 466 SVAFLCILVSFFTTWIFMRMKLPGYLQN*FVS 561
           S+ F  IL+   T  +    KLPGYL+N F S
Sbjct: 291 SIYFSTILLREETKSLISPKKLPGYLENLFKS 322


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +3

Query: 408 NTRPHTQPDHTKTESNSPYLCGVPMYFSVILYHLDIHAYEVARIF 542
           +T+    P H  + S  P+   V ++F+ +   L +H Y+ + +F
Sbjct: 8   STKFQGHPYHIVSASPWPFFLSVVLFFNCLAATLYLHGYKHSSVF 52


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 109 GLFAIPFTVLEIPNIK--IKQPTWLQAPSAMTTFSLVLLSYFLVT 237
           G+ A+ F     PN +  +++  +  +PS +T+F L L SY   T
Sbjct: 24  GVLALDFVAKTFPNQENQLEKRDYTYSPSGITSFPLDLQSYTYYT 68


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 387 TRRAWLHNTRP-HTQPDHTKTESNSPYLCGVPMYFSVI 497
           T +   +NT P + QP+ TK  +NSP     P+Y +V+
Sbjct: 148 TNQQQQNNTNPINNQPEDTKPNTNSP-----PVYHTVL 180


>SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase
           Mpg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 363

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 250 YDVIVEPPSVGSTTDEHGHSRPVAFMPNRVNG 345
           Y V+V  P+  S   E    +PV F+ NR+NG
Sbjct: 144 YGVVVHYPNSESLI-ERFVEKPVEFVSNRING 174


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 456 SPYLCGVPMYFSVILYHLDI 515
           +P  CG P YF VI + +D+
Sbjct: 421 NPTACGCPDYFKVIKHPMDL 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,762,506
Number of Sequences: 5004
Number of extensions: 58157
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)