Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_O09
         (611 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    26   1.1  
AY347946-1|AAR28374.1|  640|Anopheles gambiae putative NPY GPCR ...    24   4.4  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    23   7.8  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 163 EKWTEAQRKGQKIDIDVYGKPSEKQLRELEHVRSLSKELQ 282
           +KW +A+R  + +  +   K + KQL EL+  R  S + Q
Sbjct: 214 QKWDKARRTLEYVIYETELKETRKQLEELDGQRKSSGDKQ 253


>AY347946-1|AAR28374.1|  640|Anopheles gambiae putative NPY GPCR
           protein.
          Length = 640

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 409 CSAGSRTRIRGLRSSP 362
           C  GSRTR+R + +SP
Sbjct: 382 CWIGSRTRVRYIENSP 397


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 164 RNGRKPRGKV-RKST*TFTGNHQRNNSGNWNT*G 262
           RN R  +  + R +  T + NH  +NSG+ NT G
Sbjct: 321 RNARNAQHLLLRANRLTVSDNHNLSNSGSGNTAG 354


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 516,445
Number of Sequences: 2352
Number of extensions: 8476
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 59711994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)