Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_O07
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    29   0.83 
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    28   1.1  
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    28   1.4  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    27   3.3  
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    27   3.3  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   4.4  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    26   4.4  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    26   5.8  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    26   5.8  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   7.7  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    25   7.7  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   7.7  
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    25   7.7  

>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -3

Query: 619 QVLLQVKFNTQCIYYYINLNLNQTQKSSTLHSMRLSVWV*YICRSGICGC 470
           ++LL       C  ++  L+LN+ +    L  +R +    ++  SGICGC
Sbjct: 93  KLLLDAFEKKGCDVHFYALDLNEAELQKGLQELRQTTNYQHVKVSGICGC 142


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 179 KENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVAL 316
           +EN +D   E+S   +  AE    A E    TE++E   K++ + L
Sbjct: 625 EENSSDNEMEESSGSSVTAENEESADEVDFQTEREENARKKEELRL 670


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 304 FPLHTSLFLFCGITVLRCIVAFFGITIFS 218
           FP+   +F FC    +  IV+  G+TIF+
Sbjct: 398 FPIGIFMFAFCSKVHIHYIVSLIGLTIFN 426


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -2

Query: 269 HHRSQMHRCFLR--HHHFQQANLLGL--HRYHSLCHYFLQL 159
           HH SQ ++C LR  HH     N +G   H++  L  ++L L
Sbjct: 111 HHCSQCNKCILRMDHHCMWFKNCVGFRNHKFFFLECFYLNL 151


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 543 RAQPFIV*GYQYGCNTFVGAGYVDVS*TLMGIDALQ 436
           RA P ++ G     N  + + Y D     MGIDAL+
Sbjct: 36  RAPPPVIDGSSVDANRIIRSDYADAVYCSMGIDALE 71


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 191 TDEAPEDSPAENGDAEESND-ASENGDATEKKET 289
           T+E  E S   + D+E S+D +SE+GD+    ++
Sbjct: 194 TEEKKEGSSESSSDSESSSDSSSESGDSDSSSDS 227


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -3

Query: 289 SLFLFCGITVLRCIVAFF-GITIFSRRIFWGFIGTILFA 176
           ++F    +    C+  FF G TI+   +F G +GT L A
Sbjct: 356 AVFFIFSLFFFLCMRNFFPGFTIYFPALFLGVVGTFLIA 394


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 197 EAPEDSPAENGDAEESNDASENGDATEK 280
           E PEDS  E+G +E + D SE+G+  E+
Sbjct: 235 EPPEDS--EDGISEMNEDPSESGEMIEQ 260


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +2

Query: 179 KENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVAL 316
           ++   DE  E+   EN D  +  D +EN +   + E G    S A+
Sbjct: 246 RDEDVDEEEEEDDDENNDEGDDEDENENDEL--RSENGSPNPSAAV 289


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 212 SPAENGDAEESNDASENGDAT 274
           SP  NGD  E    +ENG+ T
Sbjct: 9   SPTTNGDKNEDGYPAENGEGT 29


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 179 KENGTDEAPEDSPAENGDAEESNDASENGD 268
           ++N TDEA ED+ +   D     + S + D
Sbjct: 362 EDNNTDEANEDAQSNVSDESPKGEGSSHSD 391


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +2

Query: 179 KENGTDE---APEDSPAENGDAEESNDASENGDATEKKE 286
           K+NG  E   + +DS  ++ +  ESND S + DA  + +
Sbjct: 376 KKNGIQEDSQSTDDSSKDDDNNSESNDMSPHNDAETRAD 414


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 206 EDSPAENGDAEESNDASENGDATEKKETGVKRKS 307
           E+   E+    E NDA+E G +  +K+   K+KS
Sbjct: 22  ENDVVEDDGKVEENDAAEEGASNGEKKKKKKKKS 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,054,949
Number of Sequences: 5004
Number of extensions: 36210
Number of successful extensions: 129
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)