Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_O07
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr...    34   0.082
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ...    33   0.19 
Z99279-6|CAB16498.1|  640|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z82284-8|CAB05294.1|  640|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z81115-5|CAB03295.1|  482|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U40933-6|AAQ23123.1|  199|Caenorhabditis elegans C.elegans homeo...    29   4.1  
U23515-7|AAK93859.3|  868|Caenorhabditis elegans Larp (rna bindi...    29   4.1  
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi...    29   4.1  
Z81131-4|CAD01083.1|  415|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z73970-3|CAA98242.2|  773|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z34802-8|CAH10787.1|  704|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z34802-7|CAA84338.2|  828|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AF026202-6|AAB71245.2|  594|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical
           protein H06O01.2 protein.
          Length = 1461

 Score = 34.3 bits (75), Expect = 0.082
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +2

Query: 179 KENGTDEAPEDSPAENGD-AEESNDASENGDATEKKETGVKRKS 307
           ++N   E   DSP  + D +++S+DASEN  ++E  E   K+K+
Sbjct: 36  EDNDEKEKAADSPESSSDQSDDSDDASENSSSSEPDEPAPKKKN 79


>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
           protein Y113G7B.12 protein.
          Length = 1042

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 13/39 (33%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
 Frame = +2

Query: 173 NGKENGTDEAPEDSPA-ENGDAEESNDASENGDATEKKE 286
           NG+E+  +EA ++  A +NG+  ++ +AS+NG+ ++  E
Sbjct: 182 NGEESDNEEASDNGEASDNGEESDNEEASDNGEESDNGE 220



 Score = 32.3 bits (70), Expect = 0.33
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +2

Query: 173 NGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKE 286
           NG+E G  EA     ++NGD  ++ +AS+NG+ ++ +E
Sbjct: 218 NGEERGNGEA-----SDNGDESDNGEASDNGEESDNEE 250



 Score = 32.3 bits (70), Expect = 0.33
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +2

Query: 173 NGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKE 286
           NG+E G  EA     ++NGD  ++ +AS+NG+ ++ +E
Sbjct: 266 NGEERGNGEA-----SDNGDESDNGEASDNGEESDNEE 298



 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 173 NGKENGTDEAPEDSPAE-NGDAEESNDASENGDATEKKE 286
           NG+E+   E  ++     NG+A ++ D S+NG+A++  E
Sbjct: 254 NGEESDNGEESDNGEERGNGEASDNGDESDNGEASDNGE 292



 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/35 (28%), Positives = 25/35 (71%)
 Frame = +2

Query: 182 ENGTDEAPEDSPAENGDAEESNDASENGDATEKKE 286
           +NG +E+  +  ++NG+  ++ +AS+NG+ ++ +E
Sbjct: 289 DNG-EESDNEEASDNGEESDNGEASDNGEESDNEE 322



 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 7/45 (15%)
 Frame = +2

Query: 173 NGKENGTDEAPE-----DSPAE--NGDAEESNDASENGDATEKKE 286
           NG+E+  +EA +     D+  E  NG+A ++ D S+NG+A++  E
Sbjct: 200 NGEESDNEEASDNGEESDNGEERGNGEASDNGDESDNGEASDNGE 244



 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/39 (28%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = +2

Query: 173 NGKENGT-DEAPEDSPAENGDAEESNDASENGDATEKKE 286
           NG+E+   +E+  +  ++NG+A ++ + S+N +A++  E
Sbjct: 176 NGEESDNGEESDNEEASDNGEASDNGEESDNEEASDNGE 214



 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +2

Query: 182 ENGTDEAPEDSPAENGDAEESNDASENGDATEKKE 286
           +NG DE+     ++NG+  ++ +AS+NG+ ++  E
Sbjct: 229 DNG-DESDNGEASDNGEESDNEEASDNGEESDNGE 262



 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +2

Query: 182 ENGTDEAPEDSPAENGDAEESNDASENGDATEKKE 286
           +NG DE+     ++NG+  ++ +AS+NG+ ++  E
Sbjct: 277 DNG-DESDNGEASDNGEESDNEEASDNGEESDNGE 310



 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/35 (28%), Positives = 24/35 (68%)
 Frame = +2

Query: 182 ENGTDEAPEDSPAENGDAEESNDASENGDATEKKE 286
           +NG +E+  +  ++NG+  ++ +AS+NG+ ++  E
Sbjct: 313 DNG-EESDNEEASDNGEESDNGEASDNGEESDNGE 346



 Score = 27.9 bits (59), Expect = 7.1
 Identities = 8/31 (25%), Positives = 22/31 (70%)
 Frame = +2

Query: 194 DEAPEDSPAENGDAEESNDASENGDATEKKE 286
           +E+  +  ++NG+A ++ + S+NG+ ++ +E
Sbjct: 160 EESDNEIESDNGEASDNGEESDNGEESDNEE 190



 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +2

Query: 173 NGKENGTDEAPEDSP-AENGDAEESNDASENGDATEKKE 286
           N  E+   EA ++   ++NG+  ++ +AS+NG+A++  E
Sbjct: 164 NEIESDNGEASDNGEESDNGEESDNEEASDNGEASDNGE 202



 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = +2

Query: 182 ENGTDEAPEDSPAENGDAEESNDASENGDATEKKE 286
           +NG +E+     ++NG+  ++ +AS+NG+ ++  E
Sbjct: 301 DNG-EESDNGEASDNGEESDNEEASDNGEESDNGE 334



 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
 Frame = +2

Query: 173 NGKENGTDEAPEDSP-AENGDA----EESNDASE--NGDATEKKETGVKRKSVAL 316
           NG+E+  +EA ++   ++NG+A    EES++  E  NG+A++  E     + + L
Sbjct: 314 NGEESDNEEASDNGEESDNGEASDNGEESDNGEERDNGEASDNGEESENGEEIGL 368


>Z99279-6|CAB16498.1|  640|Caenorhabditis elegans Hypothetical
           protein Y57G11A.2 protein.
          Length = 640

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 182 ENGTDEAPEDSPAENGDAEESNDASENGDATE 277
           E G+ EAP +  A    AEE+N+ SE   +TE
Sbjct: 372 EQGSSEAPVEMTATEDTAEETNNESEVEASTE 403


>Z82284-8|CAB05294.1|  640|Caenorhabditis elegans Hypothetical
           protein Y57G11A.2 protein.
          Length = 640

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 182 ENGTDEAPEDSPAENGDAEESNDASENGDATE 277
           E G+ EAP +  A    AEE+N+ SE   +TE
Sbjct: 372 EQGSSEAPVEMTATEDTAEETNNESEVEASTE 403


>Z81115-5|CAB03295.1|  482|Caenorhabditis elegans Hypothetical
           protein T05D4.5 protein.
          Length = 482

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 179 KENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVA 313
           K++  DE  +D+  E     E     + GD  +KK+ G K+K  A
Sbjct: 425 KKDAEDEKKKDAGDEKKKDAEDEKKKDAGDEKKKKDAGEKKKKDA 469


>U40933-6|AAQ23123.1|  199|Caenorhabditis elegans C.elegans homeobox
           protein 19,isoform b protein.
          Length = 199

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 206 EDSPAENG-DAEESNDASENGDATEKKE 286
           + +P E G D EE ND+ +NG+  E++E
Sbjct: 12  KSNPVEEGNDFEEENDSEKNGEEDEEEE 39


>U23515-7|AAK93859.3|  868|Caenorhabditis elegans Larp (rna binding
           la related protein)homolog protein 1, isoform a protein.
          Length = 868

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 179 KENGTDEAPED-SPAENGDAEESNDASENGDATEKKETG 292
           + N  +  P+D +P  NG+A+ +  A+ NG+ T   +TG
Sbjct: 120 ESNSPEHLPKDKAPIMNGNAKNAPAANRNGNNTSTAKTG 158


>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
           la related protein)homolog protein 1, isoform b protein.
          Length = 1065

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 179 KENGTDEAPED-SPAENGDAEESNDASENGDATEKKETG 292
           + N  +  P+D +P  NG+A+ +  A+ NG+ T   +TG
Sbjct: 317 ESNSPEHLPKDKAPIMNGNAKNAPAANRNGNNTSTAKTG 355


>Z81131-4|CAD01083.1|  415|Caenorhabditis elegans Hypothetical
           protein T24D1.5 protein.
          Length = 415

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 191 TDEAPEDSPAENGDAEESNDA-SENGDATEKKETG 292
           TDE  +DS  ++ D EES+D+ S N  A     TG
Sbjct: 202 TDEEEDDSDMDDEDEEESDDSNSPNSAAAVASHTG 236


>Z73970-3|CAA98242.2|  773|Caenorhabditis elegans Hypothetical
           protein C29A12.3a protein.
          Length = 773

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 179 KENGTDEAPED-SPAENGDAEESNDASENGDATEKKETGVKRKSVALD 319
           K+N  D   E  SP         +D S+   +T KK+   KR  VA+D
Sbjct: 722 KKNEKDVKVESPSPIRKKKLPSDSDESDEETSTNKKQPAKKRSRVAID 769


>Z34802-8|CAH10787.1|  704|Caenorhabditis elegans Hypothetical
           protein M88.5b protein.
          Length = 704

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/48 (25%), Positives = 19/48 (39%)
 Frame = -2

Query: 317 QEPQISSSHQSLSFLWHHRSQMHRCFLRHHHFQQANLLGLHRYHSLCH 174
           Q PQ+   H    +  H ++Q H+         Q+     HR H+  H
Sbjct: 120 QHPQMMQQHAQQGYHPHQQNQQHQAGQHQQSHHQSQNHNQHRNHNQSH 167


>Z34802-7|CAA84338.2|  828|Caenorhabditis elegans Hypothetical
           protein M88.5a protein.
          Length = 828

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/48 (25%), Positives = 19/48 (39%)
 Frame = -2

Query: 317 QEPQISSSHQSLSFLWHHRSQMHRCFLRHHHFQQANLLGLHRYHSLCH 174
           Q PQ+   H    +  H ++Q H+         Q+     HR H+  H
Sbjct: 244 QHPQMMQQHAQQGYHPHQQNQQHQAGQHQQSHHQSQNHNQHRNHNQSH 291


>AF026202-6|AAB71245.2|  594|Caenorhabditis elegans Hypothetical
           protein C10E2.6 protein.
          Length = 594

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 295 HTSLFLFCGITVLRCIVAFFGITIFSRR 212
           +T  F+FCG+ +L   +  FGI  F ++
Sbjct: 557 YTLSFVFCGVNLLASGLMLFGIPFFQKK 584


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,415,896
Number of Sequences: 27780
Number of extensions: 207312
Number of successful extensions: 939
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)