Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_O05
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    28   1.8  
SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit |Schizos...    27   2.4  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.4  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    27   3.1  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    26   7.2  
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun...    26   7.2  
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    25   9.6  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   9.6  

>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 25/79 (31%), Positives = 41/79 (51%)
 Frame = +1

Query: 115 SSSFWXWHLRVRAWLSTXTVTM*XRISACSSPVPLSGTSSYSLVRPRAT*CRLLHTNGST 294
           SSS +   +    ++ST TVT     S+ SS VP S T++ +L   +A+     HT+ + 
Sbjct: 236 SSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVP-SSTAALALNASKAS----NHTSLNA 290

Query: 295 SSIRWSVLPCSSLAVPLLL 351
            +I   V+ C + AV + L
Sbjct: 291 GAIVGIVIGCVAFAVVMAL 309


>SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +3

Query: 171 SYNVXADIGMLVTGTFVGYLIIFAGAAAGYIMQT---PSHKRIDIFYSLVG 314
           SYN   ++ +     F+G+L++  G   GY +     P +  +  F S VG
Sbjct: 17  SYNENTNLSLKTIDAFLGFLVVVGGLQFGYALLVGTYPFNSFLSGFISCVG 67


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 558 SNPNKTALYLYAAFEILF*LCSSILCT*FSL 466
           SNPNK ++Y+Y  F     LCS  L    SL
Sbjct: 72  SNPNKFSIYIYIYFFFYSFLCSPYLFKYISL 102


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 519 MLHTNTMLSY*DYYGPPNNLNSTAITVTS 605
           ++HTNT +S       P N N+T +++T+
Sbjct: 95  LIHTNTSISKPSQTATPQNTNTTQVSLTN 123


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -1

Query: 353 VNNNGTASDEQGNTDQRI-EDVDPFV*RSLHYVARGRTSEYDEVPDKGTGDEHA 195
           V+ N        + D+RI E V P   R+ +     RT ++DE+P    GD  +
Sbjct: 302 VDTNNVELTNASSQDRRINEGVRPIFWRTRNESYVSRTDQWDELPHGRWGDSRS 355


>SPCC11E10.07c |||translation initiation factor eIF2B alpha
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 239 RWCGRGLHNADSFTQTDRHLLFAGRCCLVRR*RC 340
           R+  R LH+   F Q  RHL+  G+  + R   C
Sbjct: 88  RFVTRSLHDVGDFEQCKRHLVENGKLFIQRARAC 121


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +3

Query: 126 LXLALTCSCVA-LHXHS-YNVXADIGMLVTGTFVGYLIIFAGAAAGYIMQTPSHKRIDIF 299
           L  A TC  V  LH         D+G +   T++ Y  +  GAA      TP++     +
Sbjct: 292 LGAAATCKYVFDLHPTDRMGCAGDVGWITGHTYIVYGPLMLGAATLVFESTPAYPDYSRY 351

Query: 300 YSLV 311
           +S+V
Sbjct: 352 WSVV 355


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 264  MQTPSHKRIDIFYSLVGVALFVASGAII 347
            M TP  K  ++F+S V +   +A+GAII
Sbjct: 1612 MDTPRAKFTNVFFSDVLIPALLAAGAII 1639


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,002,954
Number of Sequences: 5004
Number of extensions: 61039
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)