Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_O02
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    30   0.33 
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    28   1.3  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    27   3.0  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    26   5.3  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   7.0  

>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 14/47 (29%), Positives = 29/47 (61%)
 Frame = +3

Query: 111 QREGAVFSNEAIKQAQNTQLIPKDAVIQKVQEGIELAAYQSIPGNQR 251
           +++ ++FS+   ++ + T+ IPKD     ++ G++LA Y+    NQR
Sbjct: 117 EKQVSIFSHLDWRRRRTTENIPKDIHPAVIRLGLKLANYKIFGSNQR 163


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 177 KDAVIQKVQEGIELAAYQSIPGNQRINLYEILGDQVP-SEVINNLQSQIDQVGRN*AN 347
           KD++++KVQEG  L A Q +     +    +     P  E  N+L+ QI+Q+ R  A+
Sbjct: 329 KDSLLKKVQEGASL-AMQRVQNKHDLEKKRLQSAIQPLQEENNSLKQQIEQLQRELAS 385


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 460 LRHIHSLCELQLFLNKNLMRVYHFHLIQQLTISTSRRYYKNHKFIKII 603
           L H+ S    +  LN  L     F+L QQLTIS     YK+ +   ++
Sbjct: 297 LHHLISYYTPEDVLNGKLQTPSSFNLFQQLTISKDLLEYKSFRIPPLV 344


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 430 LRELPTQVASLRHIHSLCELQLFLNKNLMRVYHFHLIQQLTISTSRRY 573
           LRE+  Q+  L +  SL  L L +NKN+    +  L    T+S S  Y
Sbjct: 105 LREICPQIIELNY-KSLASLALEINKNVYTDLNPELYTGSTVSQSSEY 151


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 484 ELQLFLNKNLMRVYHFHLIQQLTISTSRRYYKNHK 588
           +++  +NKN  RVYH H +++L    S R +   K
Sbjct: 65  QIRQLINKNAPRVYH-HFLRRLIQGNSYRIFGTGK 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,058,151
Number of Sequences: 5004
Number of extensions: 61572
Number of successful extensions: 182
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)