Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_O02
         (787 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0232 + 23794109-23794399,23795290-23796621                       32   0.45 
01_06_1114 + 34619597-34619972,34620772-34620852,34621294-346213...    29   4.2  
03_06_0707 - 35655084-35655215,35656088-35656229,35656358-356564...    28   7.3  
05_07_0354 - 29507068-29507170,29507406-29507431,29508264-295083...    28   9.7  

>04_04_0232 + 23794109-23794399,23795290-23796621
          Length = 540

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 88  WRSPLPPHSARVLSSQTKPLSRPRTLSLFLRMP*SRRCRRVLNSR-PTSQSLATRGSTC 261
           WR+ LPP ++R L+      SR   LSL +    ++R  R+L  R P+  + AT  S C
Sbjct: 139 WRAALPPPTSRPLAPVADTASRHGPLSLAVCSVHAQRWSRLLGLRQPSGLANATGASRC 197


>01_06_1114 +
           34619597-34619972,34620772-34620852,34621294-34621394,
           34621958-34622045,34622192-34622457
          Length = 303

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -1

Query: 346 LAQFLPTWSIWLCRLLMTSEGTWSPRISYRLILWLPGIDW*AASSIPSC 200
           LA  L +  + LC+LL     ++   + Y+  + LPGI   AA  + +C
Sbjct: 76  LAGLLESKPVCLCQLLAGGASSYDISVDYKRAMALPGICGLAAPPVTAC 124


>03_06_0707 -
           35655084-35655215,35656088-35656229,35656358-35656485,
           35656852-35656944,35657183-35657252,35657324-35657445,
           35658143-35658265,35659453-35659710,35659995-35660074,
           35660244-35660389,35660773-35660906,35661001-35661137,
           35663013-35663135,35663521-35663590,35663925-35664050,
           35664166-35664393
          Length = 703

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
 Frame = +1

Query: 22  EATQIFDTTNNAVLR--VLASWSWWRSPLPPHSARVLSSQTKPLSRPRTLSLFLRMP*S- 192
           E+ Q       A LR  VLA  +   +P P     +LS Q +  +  R +S  + M  S 
Sbjct: 612 ESFQFEGEAEGAKLRRDVLAEGNVGAAPSPTGLVAILSGQEEMFAFRRAISRLIEMQTSL 671

Query: 193 --RRCRRVLNSRPTSQSLATRGSTCTRS 270
              R  RV +S     S+ T+ ST ++S
Sbjct: 672 YLERVERVHSSLQQQSSVLTKSSTVSQS 699


>05_07_0354 -
           29507068-29507170,29507406-29507431,29508264-29508301,
           29508722-29508825,29509005-29509024,29509251-29509299,
           29510319-29510406,29510463-29510562,29510660-29510737,
           29512688-29512804,29513718-29513821,29514497-29514569,
           29514904-29514981,29515091-29515215,29515278-29515341,
           29515439-29515597,29515950-29516048,29516496-29516624,
           29517010-29517075,29517160-29517304,29517379-29517500,
           29517683-29517838,29517918-29518029,29518891-29519036,
           29519148-29519252,29519391-29519540,29519703-29519776,
           29519902-29520055,29520142-29520408
          Length = 1016

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 515 IKFLLRNNCSSHKLCI*RKLAT 450
           +K  LR N   HKLCI RK+ T
Sbjct: 110 VKISLRGNTPDHKLCITRKVDT 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,974,269
Number of Sequences: 37544
Number of extensions: 375686
Number of successful extensions: 1062
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)