Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_O01
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    27   1.9  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   5.9  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    25   7.8  

>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 18/73 (24%), Positives = 35/73 (47%)
 Frame = +3

Query: 141 FIHSCLQLFDSVYKSLRIFTTKRKKKMKHDVYKSLCLTLCNSCLRMSKIYL*MIRPFYIL 320
           F+ +     DSV + L++ + KRKK  K  ++K+       S L+ S +   +++    +
Sbjct: 753 FVQNANSWIDSVNECLKVASLKRKKDKKPPLFKAHDHWNNTSNLKDSAVLFKVLQTSRSM 812

Query: 321 LITCLFLHFIKIK 359
             TC  +  +K K
Sbjct: 813 AFTCQEIENMKQK 825


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +3

Query: 114 INKLHHNISFIHSCLQLFDSVYKSLRIFTTKRKKKMKHDVYKSLC 248
           +NK   N+SF+ S  +++D +   ++ F  K   K+ + +  + C
Sbjct: 676 LNKAFSNVSFVPSLREVYDDLINVVQSFGFKDLSKI-YQILNAAC 719


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 16/62 (25%), Positives = 32/62 (51%)
 Frame = +3

Query: 108 LKINKLHHNISFIHSCLQLFDSVYKSLRIFTTKRKKKMKHDVYKSLCLTLCNSCLRMSKI 287
           L ++K  H+I  +      F+S++ SL I ++ +KK ++  +  S+  ++  S L     
Sbjct: 137 LILSKRLHSIFILRLFNDGFNSLFSSLFILSSCKKKWVRASILLSVACSVKMSSLLYVPA 196

Query: 288 YL 293
           YL
Sbjct: 197 YL 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,424,404
Number of Sequences: 5004
Number of extensions: 25522
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)