Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_O01
         (474 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78016-6|CAB01441.1|  336|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AC006801-2|AAF60751.1|  914|Caenorhabditis elegans Hypothetical ...    28   3.0  
AL132860-24|CAB60506.1|  767|Caenorhabditis elegans Hypothetical...    27   5.2  
Z82261-2|CAB05145.1|  336|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z82261-1|CAB05144.1|  336|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AF016683-5|AAB66196.2| 1010|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z78016-6|CAB01441.1|  336|Caenorhabditis elegans Hypothetical
           protein R186.2a protein.
          Length = 336

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 308 ILHFINYVPFFTFY 349
           ++HFI Y+PFFT Y
Sbjct: 255 VMHFIFYIPFFTLY 268


>AC006801-2|AAF60751.1|  914|Caenorhabditis elegans Hypothetical
           protein Y52D5A.1 protein.
          Length = 914

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = +1

Query: 55  PQTHKIFKMSNKSL-LPV---FLKLTNCIIISPSSTHVFNYLILYI 180
           P  +   KMSN    LPV   FLK++N I   P +  +F+  ++YI
Sbjct: 345 PVIYIFLKMSNSIFDLPVIYIFLKMSNSIFKLPMNNSIFDLPVIYI 390



 Score = 28.3 bits (60), Expect = 3.0
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = +1

Query: 55  PQTHKIFKMSNKSL-LPV---FLKLTNCIIISPSSTHVFNYLILYI 180
           P  +   KM+N    LPV   FLK++N I   P S  +F+  ++YI
Sbjct: 450 PVIYIFLKMNNSIFDLPVIYIFLKMSNSIFDLPMSNSIFDLPVIYI 495


>AL132860-24|CAB60506.1|  767|Caenorhabditis elegans Hypothetical
           protein Y56A3A.30 protein.
          Length = 767

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 337 KRHVINKM*NGRIIQRYIFDILKHEL 260
           +RH++       II RY+ D+LKH +
Sbjct: 99  ERHILENYEYSMIIHRYVNDVLKHAI 124


>Z82261-2|CAB05145.1|  336|Caenorhabditis elegans Hypothetical
           protein C35D6.2 protein.
          Length = 336

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
 Frame = +3

Query: 141 FIHSCLQLFDSVYKSLRIFTTKRKK---KMKHDVYKSLCLTLC--NSCLRMSKIYL*MIR 305
           F  +CL LF  +Y++LR +   R K   +++  ++K++ L L    S + M  IY     
Sbjct: 206 FCVTCLALFLQIYRALRKYGEVRSKQTLELQKRLFKAIFLQLAIPFSIISMPMIYYTYTP 265

Query: 306 PFYILLITCLFL 341
            F  +L + +F+
Sbjct: 266 FFNAILNSIMFI 277


>Z82261-1|CAB05144.1|  336|Caenorhabditis elegans Hypothetical
           protein C35D6.1 protein.
          Length = 336

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
 Frame = +3

Query: 141 FIHSCLQLFDSVYKSLRIFTTKRKK---KMKHDVYKSLCLTLC--NSCLRMSKIYL*MIR 305
           F  +CL LF  +Y++LR +   R K   +++  ++K++ L L    S + M  IY     
Sbjct: 206 FCVTCLALFLQIYRALRKYGEVRSKQTLELQKRLFKAIFLQLAIPFSIISMPMIYYTYTP 265

Query: 306 PFYILLITCLFL 341
            F  +L + +F+
Sbjct: 266 FFNAILNSIMFI 277


>AF016683-5|AAB66196.2| 1010|Caenorhabditis elegans Hypothetical
           protein K09F6.6 protein.
          Length = 1010

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 237 KSLCLTLCNSCLRMSKIYL*MIRPFYILLITCLFLHFI 350
           K L  T+C SC R+S +   +++  + LL T + LHF+
Sbjct: 507 KYLDETICESCERVSAVLRKLVKDAFPLLYT-MKLHFL 543


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,705,748
Number of Sequences: 27780
Number of extensions: 137926
Number of successful extensions: 369
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)